LOCUS ACV55021.1 1153 aa PRT BCT 11-DEC-2013 DEFINITION Eggerthella lenta DSM 2243 DNA polymerase III, alpha subunit protein. ACCESSION CP001726-1026 PROTEIN_ID ACV55021.1 SOURCE Eggerthella lenta DSM 2243 ORGANISM Eggerthella lenta DSM 2243 Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella. REFERENCE 1 (bases 1 to 3632260) AUTHORS Saunders,E., Pukall,R., Abt,B., Lapidus,A., Glavina Del Rio,T., Copeland,A., Tice,H., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Chain,P., Meincke,L., Sims,D., Brettin,T., Detter,J.C., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Han,C. TITLE Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) JOURNAL Stand Genomic Sci 1 (2), 174-182 (2009) PUBMED 21304654 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The complete genome of Eggerthella lenta DSM 2243 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3632260) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Pukall,R., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (02-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4082980 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Eggerthella lenta VPI 0255, DSM 2243 Culture Collection ID :: DSM 2243, ATCC 25559, JCM 9979 GOLD Stamp ID :: Gc01054 Funding Program :: DOE-GEBA 2007 Number of Reads :: 39464-Sanger, 471609-454 Assembly Method :: Newbler version 1.1.02.15, Phrap Sequencing Depth :: 10.2x Sanger; 25.3x 454 Gene Calling Method :: Prodigal Isolation Site :: Rectal tumor Collection Date :: 1938 Host Name :: Homo sapiens Host Health :: Patient with rectal tumor Body Sample Site :: Blood Oxygen Requirement :: Anaerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: Bacteremia Habitat :: Blood, Host, Human intestinal microflora Phenotypes :: Pathogen ##Metadata-END## FEATURES Qualifiers source /organism="Eggerthella lenta DSM 2243" /mol_type="genomic DNA" /strain="DSM 2243" /culture_collection="DSM:2243" /type_material="type strain of Eggerthella lenta" /db_xref="taxon:479437" protein /locus_tag="Elen_1050" /EC_number="2.7.7.7" /inference="protein motif:TFAM:TIGR00594" /note="KEGG: sfu:Sfum_1225 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein" /transl_table=11 /db_xref="InterPro:IPR003141" /db_xref="InterPro:IPR004013" /db_xref="InterPro:IPR004365" /db_xref="InterPro:IPR004805" /db_xref="InterPro:IPR011708" BEGIN 1 MAFVHLHNHT EYSLLDGHTH IYDMVKRAAD LDMPAVAISD HGVMSGVPQL CEMCDKVEAE 61 TGKRVKPIYG CEVYFTTDEE LRKDTKPKLY HLLLLAKTNE GYHNLVKLVS ESHVDNFYYK 121 PRTTFSMLQK YGKGIIGSSA CIAGIIPKLL DNRQVDEAVE WAKKFASCFE PGDFYIELQN 181 QGIRTDAGFT QTELNHMLTD VAKAAGLKTI ATNDFHYLTR EDARAQDYML CIGTGAAFND 241 ANRMRFENDQ FYMKTEEEMR EALKDFPEAC DTTVEVAEKV NVVLERDSIL PRFPLPEGET 301 EESYFRKRVQ EGLVKHYGNP VPQEAQERAD YEMGIIIQQG FPAYFLIVQE YIEWARSQGI 361 GVGPGRGSAA GAIVAYAMDI TALDPLSNGL LFERFLSPER VEMPDIDVDF EQGRREEVIS 421 HIKDVYGEDH VSQVITFGTL QAKNAVRDAA RVLDYPYSTG DKITKMIGDE LGITIDKALA 481 TNPDLKKAYE TEEDVKAVID AALSIEGHVR GEGVHACATI ICRDPMADHV PMKRDTKGGG 541 IITQYDGHYT PELGLLKMDF LGLRTLDVLT IACRNIEQRF GTKVIPEDIP IDDEGAFKLM 601 QSGNMDGLFQ VEGALYVSLF ARLPPTRFSD IVASIALNRP GPLESGMVED YIKVASGKTS 661 IHYYDERLRP ILEETYGTMV YQEQIMQISM AMSGFSAGKA DKLRKAMGKK KLDVMRALQE 721 DWNTGAVENG YPLEIAKQIW EDAEKFAKYA FNKSHSAAYA ILVMRTAYLK AHYPNDFMAA 781 VLSSYMGNTD RLIRYIASCN HSGIPVLPPD INSSNAEFTP TDEGVRFGLV GVRGVGANVA 841 EAIIEEREAN GPFTSLHDFV NRLDAKCYNR KTLEALIKGG AFDSTGYTRK QLMYFVDETP 901 LLESASKRQK DRESGQVSMF DLFGDDPDSG FEEEVPEPDG VEWPKRQLLT FEKEIMKIYV 961 SDHPLRPYEG TIARMTKFSL GDLAERTKEI KSAVFVGMIS NVVTKLTKRG TKMATFTLED 1021 TTGHVECICF KYDDNAEAIQ EDAIVKVKGK FEANDRGNQI MAFEVEVIEL NEADARPSHL 1081 ELKVASSDFD QSKSLRLNRI LKSYPGRDGV VLLVQQSDGR KFRAELPVSV DSRSPVMRSE 1141 IQDLFGSQVW RAS //