LOCUS ACU06022.1 2396 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 hypothetical protein protein.
ACCESSION CP001681-3796
PROTEIN_ID ACU06022.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_3831"
/transl_table=11
BEGIN
1 MPLKTLLTLF LFLTITFSGQ QAFSQVVPQK GKQDTLKNSF GLKEKQRLGI RSLSGPFYPL
61 PENMHRKVEY DALNKRYIIQ ELIGDKPFGQ VQYMTVDEYM RLVNSEIKRE NWRVLSDQEV
121 NDVRRTGIIP SLKVNSKAFE RIFGGTTIDI QPRGEAELTF LGRINKNENP LFNERQRVQG
181 NFDFNQRIQM DVIGNIGTKL KINMNYNTEA QFDFENQVKL DYTGAEDDII QKIEAGNVSL
241 PLNTTLINGT QALFGIKTQL KFGKLNVATV FTQQKSQSRE IQINNGAQQN EYRLSADNYE
301 ANKHYFLARY FRENYNKVLS NPPTITSGVL ITKVEVWITN KAGNTQDSRD VLGFIDLGEN
361 QTFNPGITGG ASVLPSGFTN PLFPRNSNDL LTRIPANSRF TNSNEIISFF AGSGGTDNYA
421 KLTYARKLSD REYTFHPQLG YISLNNALNS DEVLTVAYRY TYNGVEYQVG EFSTDVPFDP
481 STPKVLYTKL LKNDVIKTNL PTWDLMMKNI YSIGGYQISQ QNFKLDVFRI DEKTGVEKPL
541 IQEGQKLDAD RRPLNGKQWI QVTGLDRLNQ QKERKPDGVF DFETENKPFG TSSTNTQNSS
601 YNNGNSGSTT NNQVNFSTNT INGYITIDPL NGRVIFPLIE PFGKDLADQF LPTEQALIDK
661 YTFTALYDST KVVAQQLFSN QNRYIIKGAY QSEIASEFSL NAINVPEGSV KVFAGTIPLQ
721 EGVDFTVDYQ GGRVRIINPA LLSSGQPIRI STENNELFGL QQRSLFGTRL DYKVNNKLNL
781 GGTLMNLTEK PLTAKVNIGE EPISNTMWGL DLNYSSPSRF LTKLVDKLPL LSTKVPSNIA
841 FSGEFAQLIP GHPSALNFGG NKGGVSYLDD FEASRSVIDL KSAIAWQLSG TPQFFPEASR
901 IDDLSYGFNR ARIAFYNIDP IFYNRNTGTI PDNLRNNRNE LSNHYVREII EQEVFPFKET
961 ATGQAITLPT LDVAFYPMVR GPYNYTTTGF NPNGTLTNPR SRWGGLFRKI ETSDFQALNI
1021 EYIELWVMDP NIYKPNSTGG DLYFNLGNIS EDILKDGRKS LENGLPANGD PEKYDETNWG
1081 RVPKLQPVVQ AFDNDPAARK AQDVGLDGLS NADEKTKFAA LINQIKGQLN PDAAAEFDND
1141 PSSDDYVYFR GRALDQVNAG ILKRYQRYNG PEGNSKTAQQ SQEDFGVDNS ASTSLPDGED
1201 INRDNNMTQS DEYFQYKVSM RPGDLMVGQN FVTDKITSQV KLANGQTQPV TWYQIRIPLA
1261 QYQQKVGSIQ DFKSIRFIRM FMTNFADTTV LRFGKIQLVR GEWRQYNANN EVSQVILDPA
1321 LQNLGPDNST IEISTVNIEE NGKRTPIPYV VPPGIERERD FSNYRGDTRQ NEQSLAVTIK
1381 NLRDGYGRAT FKTALNDFRS YKHLEMYIHL EALGNAPIND NDLSAFLRIG TDNQDNYYEY
1441 SQPLKVTRPG TSDPYAIWPD QNKLDIELEL FQKAKIARNS ALDVDGLPWN ISKPFTYMVD
1501 GKKIVVKGQP DMSKVRVYML GVLNPYRNGA SPGDDGLDKS AQVWFNEMRL TEFDERGGWA
1561 ATARMSAKLA DFADVNVSGS KSTIGFGSLE KRVSERNRAD NVFFDISSSM ELGKFFPQKT
1621 GIKIPMFVSY SSQVSTPQYD PKMPDIELKN ALDKASKSEK KAILEYAQDY TTRNSINFTN
1681 VRKERTNPDK KSQVWDIENF NASYAYTKFA HRDFINENNV QKTYRASLAY SYSGQAKNVE
1741 PFAKIIKSNT LALLKDFNFN PLPNAINFRI DVDRYYSENS LRNNDPNNSI PINTTFNKNF
1801 LITRVYGISW NLTRSLTLDF DATNYSIIDE PEGRIEGLKR DTIWQNLKRL GRTTDYNHNL
1861 NVTYSLPLNK IPGMDWVTVA TRYGTNFNWQ TEPLSTLRDP LIDLGNTIQN SRTIQVNPTL
1921 NLAGLYNKFG FVRRANGAGD KPSSGASFFV GLLTSVKNVN AAFTQTKGIF LPGYLPRVSY
1981 FGLDEATGAP GLGFVFGSQR DIREMALNNG WITRDTLQSQ LYINTLREDL SLTGLIEPIK
2041 DLSITLTANK NRTLNYSTNF RYDQSARDFE NLSPFTTGDY SVSFISLRTA FSEKQGSTVS
2101 KLFAEFMGNR QVISQRLGAQ NVNSSGNMPT GYADGYDKNS QDVLVSAFLA AYTGKSASSI
2161 GLNSLPKIPL PNWRLNYRGL TRIAFLADRF SSIDLRHAYR SVYSVNGFNS LIRYKESNGF
2221 VSSRDENSNF LPYYQYAQVT IAEQFSPLIG VDTRLKNNMT ANFELGRTRL LGLSLANSQL
2281 AQLSENNMVF GLGYRTTKFR FPFGLFKGLK TDNNMDFKLD VAIRDNKTVI YRADVTEAEV
2341 SSGAKNITLR PSVDYILNQR FNVRLFYDSN VTKPYTSQTF NTSFSNFGFS LRITLN
//