LOCUS ACU06022.1 2396 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 hypothetical protein protein. ACCESSION CP001681-3796 PROTEIN_ID ACU06022.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_3831" /transl_table=11 BEGIN 1 MPLKTLLTLF LFLTITFSGQ QAFSQVVPQK GKQDTLKNSF GLKEKQRLGI RSLSGPFYPL 61 PENMHRKVEY DALNKRYIIQ ELIGDKPFGQ VQYMTVDEYM RLVNSEIKRE NWRVLSDQEV 121 NDVRRTGIIP SLKVNSKAFE RIFGGTTIDI QPRGEAELTF LGRINKNENP LFNERQRVQG 181 NFDFNQRIQM DVIGNIGTKL KINMNYNTEA QFDFENQVKL DYTGAEDDII QKIEAGNVSL 241 PLNTTLINGT QALFGIKTQL KFGKLNVATV FTQQKSQSRE IQINNGAQQN EYRLSADNYE 301 ANKHYFLARY FRENYNKVLS NPPTITSGVL ITKVEVWITN KAGNTQDSRD VLGFIDLGEN 361 QTFNPGITGG ASVLPSGFTN PLFPRNSNDL LTRIPANSRF TNSNEIISFF AGSGGTDNYA 421 KLTYARKLSD REYTFHPQLG YISLNNALNS DEVLTVAYRY TYNGVEYQVG EFSTDVPFDP 481 STPKVLYTKL LKNDVIKTNL PTWDLMMKNI YSIGGYQISQ QNFKLDVFRI DEKTGVEKPL 541 IQEGQKLDAD RRPLNGKQWI QVTGLDRLNQ QKERKPDGVF DFETENKPFG TSSTNTQNSS 601 YNNGNSGSTT NNQVNFSTNT INGYITIDPL NGRVIFPLIE PFGKDLADQF LPTEQALIDK 661 YTFTALYDST KVVAQQLFSN QNRYIIKGAY QSEIASEFSL NAINVPEGSV KVFAGTIPLQ 721 EGVDFTVDYQ GGRVRIINPA LLSSGQPIRI STENNELFGL QQRSLFGTRL DYKVNNKLNL 781 GGTLMNLTEK PLTAKVNIGE EPISNTMWGL DLNYSSPSRF LTKLVDKLPL LSTKVPSNIA 841 FSGEFAQLIP GHPSALNFGG NKGGVSYLDD FEASRSVIDL KSAIAWQLSG TPQFFPEASR 901 IDDLSYGFNR ARIAFYNIDP IFYNRNTGTI PDNLRNNRNE LSNHYVREII EQEVFPFKET 961 ATGQAITLPT LDVAFYPMVR GPYNYTTTGF NPNGTLTNPR SRWGGLFRKI ETSDFQALNI 1021 EYIELWVMDP NIYKPNSTGG DLYFNLGNIS EDILKDGRKS LENGLPANGD PEKYDETNWG 1081 RVPKLQPVVQ AFDNDPAARK AQDVGLDGLS NADEKTKFAA LINQIKGQLN PDAAAEFDND 1141 PSSDDYVYFR GRALDQVNAG ILKRYQRYNG PEGNSKTAQQ SQEDFGVDNS ASTSLPDGED 1201 INRDNNMTQS DEYFQYKVSM RPGDLMVGQN FVTDKITSQV KLANGQTQPV TWYQIRIPLA 1261 QYQQKVGSIQ DFKSIRFIRM FMTNFADTTV LRFGKIQLVR GEWRQYNANN EVSQVILDPA 1321 LQNLGPDNST IEISTVNIEE NGKRTPIPYV VPPGIERERD FSNYRGDTRQ NEQSLAVTIK 1381 NLRDGYGRAT FKTALNDFRS YKHLEMYIHL EALGNAPIND NDLSAFLRIG TDNQDNYYEY 1441 SQPLKVTRPG TSDPYAIWPD QNKLDIELEL FQKAKIARNS ALDVDGLPWN ISKPFTYMVD 1501 GKKIVVKGQP DMSKVRVYML GVLNPYRNGA SPGDDGLDKS AQVWFNEMRL TEFDERGGWA 1561 ATARMSAKLA DFADVNVSGS KSTIGFGSLE KRVSERNRAD NVFFDISSSM ELGKFFPQKT 1621 GIKIPMFVSY SSQVSTPQYD PKMPDIELKN ALDKASKSEK KAILEYAQDY TTRNSINFTN 1681 VRKERTNPDK KSQVWDIENF NASYAYTKFA HRDFINENNV QKTYRASLAY SYSGQAKNVE 1741 PFAKIIKSNT LALLKDFNFN PLPNAINFRI DVDRYYSENS LRNNDPNNSI PINTTFNKNF 1801 LITRVYGISW NLTRSLTLDF DATNYSIIDE PEGRIEGLKR DTIWQNLKRL GRTTDYNHNL 1861 NVTYSLPLNK IPGMDWVTVA TRYGTNFNWQ TEPLSTLRDP LIDLGNTIQN SRTIQVNPTL 1921 NLAGLYNKFG FVRRANGAGD KPSSGASFFV GLLTSVKNVN AAFTQTKGIF LPGYLPRVSY 1981 FGLDEATGAP GLGFVFGSQR DIREMALNNG WITRDTLQSQ LYINTLREDL SLTGLIEPIK 2041 DLSITLTANK NRTLNYSTNF RYDQSARDFE NLSPFTTGDY SVSFISLRTA FSEKQGSTVS 2101 KLFAEFMGNR QVISQRLGAQ NVNSSGNMPT GYADGYDKNS QDVLVSAFLA AYTGKSASSI 2161 GLNSLPKIPL PNWRLNYRGL TRIAFLADRF SSIDLRHAYR SVYSVNGFNS LIRYKESNGF 2221 VSSRDENSNF LPYYQYAQVT IAEQFSPLIG VDTRLKNNMT ANFELGRTRL LGLSLANSQL 2281 AQLSENNMVF GLGYRTTKFR FPFGLFKGLK TDNNMDFKLD VAIRDNKTVI YRADVTEAEV 2341 SSGAKNITLR PSVDYILNQR FNVRLFYDSN VTKPYTSQTF NTSFSNFGFS LRITLN //