LOCUS ACU04901.1 848 aa PRT BCT 28-JAN-2014
DEFINITION Pedobacter heparinus DSM 2366 Beta-galactosidase protein.
ACCESSION CP001681-2675
PROTEIN_ID ACU04901.1
SOURCE Pedobacter heparinus DSM 2366
ORGANISM Pedobacter heparinus DSM 2366
Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
Sphingobacteriaceae; Pedobacter.
REFERENCE 1 (bases 1 to 5167383)
AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A.,
Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L.,
Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J.,
Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M.,
Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
Kyrpides,N.C., Klenk,H.P. and Detter,J.C.
TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM
762-3)
JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009)
PUBMED 21304637
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE The draft genome of Pedobacter heparinus DSM 2366
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 5167383)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F.,
Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and
Eisen,J.A.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4083041
Source DNA and organism available from Hans-Peter Klenk at the
German Collection of Microorganisms and Cell Cultures (DSMZ)
(hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366
Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC
12017, NCIB 9290
GOLD Stamp ID :: Gc01041
Funding Program :: DOE-GEBA 2007
Assembly Method :: Phrap
Sequencing Depth :: 7.5x
Gene Calling Method :: Prodigal
Isolation Site :: Soil
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Motility :: Motile
Sporulation :: Nonsporulating
Temperature Range :: Mesophile
Temperature Optimum :: 25 - 30C
pH :: 7
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Soil
Phenotypes :: Chondroitinases producer, Heparinases
producer
Energy Source :: Chemoorganotroph
##Metadata-END##
FEATURES Qualifiers
source /organism="Pedobacter heparinus DSM 2366"
/mol_type="genomic DNA"
/strain="DSM 2366"
/type_material="type strain of Pedobacter heparinus"
/db_xref="taxon:485917"
protein /locus_tag="Phep_2700"
/note="PFAM: Glycosyl hydrolases family 2,
immunoglobulin-like beta-sandwich domain; Glycosyl
hydrolases family 2, sugar binding domain; Glycosyl
hydrolases family 2, TIM barrel domain; TIGRFAM:
glutamate--cysteine ligase/gamma-glutamylcysteine
synthetase, Streptococcus agalactiae type"
/transl_table=11
BEGIN
1 MTNLASVKTL RKPNIFLFTL TEKVKRVKLV FFLGLLICSQ YVFAQNRQRL INNWEYLKGD
61 LGGIWEAVRP VKEGNPESVP LWQKVSLPHC FNALDAVDPD VNYYQGPGWY RTQLELKNPY
121 TDGRTLLHFE GAGQKTQVYI YDKKVAEHVG GYDEWTADIT DAVKEFKKTA VFQTQFKGKV
181 PLSIRCDNSR DLEMIPSDLS DFNVYGGLYR YLNLVYVPKV SVDKIFAAAS VDAKGVLGKL
241 SISGRLLNPD GVDTVSVKIE VKDPEGKVVA SWQNQIKAFH GDKALWETSL KNPKLWSPEL
301 PQLYTVETSI TAKGDTDIQR EKIGFRNFEF VKKGPFMLNG KRLLLRGTHR HEDHAGVAAA
361 MTEEMITEEM RMMKDMGVNF IRLGHYQQSR IVLDLCDSLG ILVWEEIPWC RGGLGGDTYK
421 DQARRMLTNM IEQHYNHAAV MIWGLGNEND WPGDFNEFDE QKIRTFMKEL NDLAHKLDPS
481 RKTAIRRCDF CKDIVDVYSP SIWAGWYRGI YTEYKEASKK EFDRVDHFLH VEWGGDSHAG
541 RHSESPDKAL SLVQTGVGAD ERAGDASLFG GSARVSKDGD WSESYIVNLI DWHLKEQENM
601 PWLTGAAYWP FKDFSTPVRP DNPVPYMNQK GVIERDFSKK EAYYVFQSYW TKAPMAHIYG
661 HSWPVRWGDA GEQKMVKVYS NCAEAELFMN GKSMGKKKRN SQNYPAAGLK WMVKYKEGKN
721 EIKVVATTKE GKTITDELVQ EYQTAKWDKP AKLVLEKVSE HVSEKDNIAV IQVKLLDKNN
781 ILCLDARDYV TFGLTGDGKL IDDQGTADGS RKVQLYNGRA VISVNLNKGK SVASVKADGI
841 PSAFVELK
//