LOCUS ACU04901.1 848 aa PRT BCT 28-JAN-2014 DEFINITION Pedobacter heparinus DSM 2366 Beta-galactosidase protein. ACCESSION CP001681-2675 PROTEIN_ID ACU04901.1 SOURCE Pedobacter heparinus DSM 2366 ORGANISM Pedobacter heparinus DSM 2366 Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter. REFERENCE 1 (bases 1 to 5167383) AUTHORS Han,C., Spring,S., Lapidus,A., Del Rio,T.G., Tice,H., Copeland,A., Cheng,J.F., Lucas,S., Chen,F., Nolan,M., Bruce,D., Goodwin,L., Pitluck,S., Ivanova,N., Mavromatis,K., Mikhailova,N., Pati,A., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.C., Saunders,E., Chertkov,O., Brettin,T., Goker,M., Rohde,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Detter,J.C. TITLE Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) JOURNAL Stand Genomic Sci 1 (1), 54-62 (2009) PUBMED 21304637 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE The draft genome of Pedobacter heparinus DSM 2366 JOURNAL Unpublished REFERENCE 3 (bases 1 to 5167383) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Mikhailova,N., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Klenk,H.-P. and Eisen,J.A. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (31-JUL-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4083041 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Pedobacter heparinus HIM 762-3, DSM 2366 Culture Collection ID :: DSM 2366, ATCC 13125, IFO 12017, NBRC 12017, NCIB 9290 GOLD Stamp ID :: Gc01041 Funding Program :: DOE-GEBA 2007 Assembly Method :: Phrap Sequencing Depth :: 7.5x Gene Calling Method :: Prodigal Isolation Site :: Soil Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Chondroitinases producer, Heparinases producer Energy Source :: Chemoorganotroph ##Metadata-END## FEATURES Qualifiers source /organism="Pedobacter heparinus DSM 2366" /mol_type="genomic DNA" /strain="DSM 2366" /type_material="type strain of Pedobacter heparinus" /db_xref="taxon:485917" protein /locus_tag="Phep_2700" /note="PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type" /transl_table=11 BEGIN 1 MTNLASVKTL RKPNIFLFTL TEKVKRVKLV FFLGLLICSQ YVFAQNRQRL INNWEYLKGD 61 LGGIWEAVRP VKEGNPESVP LWQKVSLPHC FNALDAVDPD VNYYQGPGWY RTQLELKNPY 121 TDGRTLLHFE GAGQKTQVYI YDKKVAEHVG GYDEWTADIT DAVKEFKKTA VFQTQFKGKV 181 PLSIRCDNSR DLEMIPSDLS DFNVYGGLYR YLNLVYVPKV SVDKIFAAAS VDAKGVLGKL 241 SISGRLLNPD GVDTVSVKIE VKDPEGKVVA SWQNQIKAFH GDKALWETSL KNPKLWSPEL 301 PQLYTVETSI TAKGDTDIQR EKIGFRNFEF VKKGPFMLNG KRLLLRGTHR HEDHAGVAAA 361 MTEEMITEEM RMMKDMGVNF IRLGHYQQSR IVLDLCDSLG ILVWEEIPWC RGGLGGDTYK 421 DQARRMLTNM IEQHYNHAAV MIWGLGNEND WPGDFNEFDE QKIRTFMKEL NDLAHKLDPS 481 RKTAIRRCDF CKDIVDVYSP SIWAGWYRGI YTEYKEASKK EFDRVDHFLH VEWGGDSHAG 541 RHSESPDKAL SLVQTGVGAD ERAGDASLFG GSARVSKDGD WSESYIVNLI DWHLKEQENM 601 PWLTGAAYWP FKDFSTPVRP DNPVPYMNQK GVIERDFSKK EAYYVFQSYW TKAPMAHIYG 661 HSWPVRWGDA GEQKMVKVYS NCAEAELFMN GKSMGKKKRN SQNYPAAGLK WMVKYKEGKN 721 EIKVVATTKE GKTITDELVQ EYQTAKWDKP AKLVLEKVSE HVSEKDNIAV IQVKLLDKNN 781 ILCLDARDYV TFGLTGDGKL IDDQGTADGS RKVQLYNGRA VISVNLNKGK SVASVKADGI 841 PSAFVELK //