LOCUS ABU70559.1 1489 aa PRT BCT 25-AUG-2017
DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein.
ACCESSION CP000789-1498
PROTEIN_ID ABU70559.1
SOURCE Vibrio campbellii ATCC BAA-1116
ORGANISM Vibrio campbellii ATCC BAA-1116
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
Vibrionaceae; Vibrio.
REFERENCE 1 (bases 1 to 3765351)
AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
Tu,K.C., Irgon,J. and Wilson,R.K.
CONSRTM The Vibrio harveyi Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that
'glow in the dark,' just as the commonly known firefly. Based on
their 16S ribosomal RNA (rRNA) classification, they belong to the
group of bacteria known as Proteobacteria, which is further
sub-divided into five groups, including the gamma proteobacteria.
This group includes many families, one of which is the Vibrionaceae
(bioluminescent bacteria). One of the Vibrios is a human pathogen
and causes cholera. Vibrio harveyi can be found globally in marine
environments, either in a free-living state or in symbiosis with
marine life. The sequenced strain is BB120, ATCC BAA-1116
http://www.atcc.org/common/catalog/numSearch/numResults.cfm
Sequence/Assembly
The genome of Vibrio harveyi was sequenced to 8X coverage using a
combination of plasmid and fosmid end sequences. Additional 454
sequence reads bring the present coverage to 10.8X. Assembly was
performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
The genome has undergone automated sequence improvement
(pre-finishing) followed by manual finishing, and automated
annotation. The National Science Foundation (NSF) is providing
funding for the complete sequence of the Vibrio harveyi genome.
Annotation
Coding sequences were predicted using GeneMark v3.3 and Glimmer2
v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
blasted against NCBI's non-redundant (NR) database and predictions
generated based on protein alignments. RNA genes were determined
using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
the contig level and may not necessarily reflect any known order or
orientation between contigs.For questions regarding this assembly
or project, please visit the Vibrio harveyi genome page
(http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
choose the designated contact person.
FEATURES Qualifiers
source /organism="Vibrio campbellii ATCC BAA-1116"
/mol_type="genomic DNA"
/strain="ATCC BAA-1116; BB120"
/db_xref="ATCC:BAA-1116"
/db_xref="taxon:2902295"
/chromosome="I"
protein /locus_tag="VIBHAR_01589"
/inference="protein motif:HMMPfam:IPR007406"
/inference="protein motif:HMMPIR:IPR012090"
/inference="protein motif:superfamily:IPR010978"
/note="KEGG: eci:UTI89_C0996 0. mukB; cell division
protein MukB K03632; COG: COG3096 Uncharacterized protein
involved in chromosome partitioning; Psort location:
OuterMembrane, score:9.49"
/transl_table=11
/db_xref="InterPro:IPR007406"
/db_xref="InterPro:IPR010978"
/db_xref="InterPro:IPR012090"
BEGIN
1 MSMIERGKYQ SLTMVNWNGF FARTFDIDGL VTTLSGGNGA GKSTTMAAFI TALIPDQTLL
61 HFRNTTEAGS SQSSRDKGLY GKLQPGACYA ALDVVNSRNQ RLLFAVKLQQ VAGRDKKVDI
121 KPFVIQGLPS HVKPTDILIE SVSATQARVR QINEVKESIA EFEGVQFKVF SSIVDYHAQM
181 FEFGVIPKKL RNSGDRSKFY RLIEASLYGG ISSAITRSLR DYLLPQNGGV KKAFQDMESA
241 LRENRMTLEA IKTTQADRDL FKHLITESTN YVAADYMRHA NDRRNKLDKT LSLRSELFGS
301 RETLVEQNNL LNRVQEELEL LIESESALEQ DYQAASDHLQ LVQNALRQQE KIERYQEDLE
361 ELSERLEEQM MVVEEAQERV MMVEEQATVA EEEVDSLKTQ LADYQQALDV QQTRALQYQQ
421 AVQALEKAKQ LLGDDSLTAE SAQALVSELK TKESESTNAL LSVKHKLDMS SAAAEQFETA
481 LKLVQSIVGQ VERKDASEHA KTAIAKARES QQVAQNEQQW RAQHRDLERS LNQQRQAREL
541 VNEYQKQFHV ELTDEITFEQ ERERHAMQID SLEMTQEDVR EQRSEQRRLE QDAAAEINKL
601 EAIAPTWIAA NDALEKLREQ SGAELEDSQS VMSQMQVVLE QEKTLSLAKD KLAERRSQLD
661 SEIERLASPG GSNDPRLKGL ADTLGGVLLS EIYDDITIDD APYFSAMYGP ARHAIVVSDL
721 SGIEEKLVEL DDCPEDLYII EGDIDAFDDS SFDAEELEGA VCVRMNDRQM RYSRLPEIPL
781 FGRAAREQRL ELLRNEREEV VEKHAKAAFD SQKMQRLYQA FNQFVASHIQ VAFEADPEQA
841 LATIRDKRNQ ITRVLADLDA KEQQQRSLLQ NSKQALSSLD KLAPNMALIE DESLQARFDE
901 LEEKIAQLSE AKAFLTNHAK AVEELEKVAV ALDADPEQFD ALEAEYKAAD EQLQDLKKQI
961 FALSDLVERR HYFAYSDSVD LLNKSSELSE QLKAKLVQAE QMRTRSREEL KQSQGQMNQY
1021 NQVLVSLKSS HQAKLETVQE FKQELQEFGV NADEGAEERA MRRRDELHER LHTSRSRKSE
1081 YERTITSTEL EMKGLAKRLK KVQKEYVELR TFVVAAKAGW CSVLRLAREN DVERRLHKRE
1141 LAYMSADELR SMSDKSLGAL RIAVANNDDL RDALRLSEDN TRPERKVLFY IAVYQHLRER
1201 IRQDIIRTDD PVEAIEEMEV ELARLTEELT QRENRLAISS ESVASIIKKT IQREQNRIRM
1261 LNQGLSNISF GQVKGVRLNV KIRESHEVLL NGLATQQEQH KDLFESTRFT FSEAMAKLFQ
1321 RVNPHIDMGQ RSPQVLGEEL LDYRNYLELS VEVNRGTDGW LQAESGALST GEAIGTGQSI
1381 LLMVVQSWEE ESRRLRSKDI VPCRLLFLDE AARLDAKSIA TLFELCDRLD MQLLIAAPEN
1441 ISPEKGTTYK LVRKVFKDHE HVHVVGLRGF GQTDKPKTEA QEMIEEFES
//