LOCUS ABU70559.1 1489 aa PRT BCT 25-AUG-2017 DEFINITION Vibrio campbellii ATCC BAA-1116 hypothetical protein protein. ACCESSION CP000789-1498 PROTEIN_ID ABU70559.1 SOURCE Vibrio campbellii ATCC BAA-1116 ORGANISM Vibrio campbellii ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3765351) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. FEATURES Qualifiers source /organism="Vibrio campbellii ATCC BAA-1116" /mol_type="genomic DNA" /strain="ATCC BAA-1116; BB120" /db_xref="ATCC:BAA-1116" /db_xref="taxon:2902295" /chromosome="I" protein /locus_tag="VIBHAR_01589" /inference="protein motif:HMMPfam:IPR007406" /inference="protein motif:HMMPIR:IPR012090" /inference="protein motif:superfamily:IPR010978" /note="KEGG: eci:UTI89_C0996 0. mukB; cell division protein MukB K03632; COG: COG3096 Uncharacterized protein involved in chromosome partitioning; Psort location: OuterMembrane, score:9.49" /transl_table=11 /db_xref="InterPro:IPR007406" /db_xref="InterPro:IPR010978" /db_xref="InterPro:IPR012090" BEGIN 1 MSMIERGKYQ SLTMVNWNGF FARTFDIDGL VTTLSGGNGA GKSTTMAAFI TALIPDQTLL 61 HFRNTTEAGS SQSSRDKGLY GKLQPGACYA ALDVVNSRNQ RLLFAVKLQQ VAGRDKKVDI 121 KPFVIQGLPS HVKPTDILIE SVSATQARVR QINEVKESIA EFEGVQFKVF SSIVDYHAQM 181 FEFGVIPKKL RNSGDRSKFY RLIEASLYGG ISSAITRSLR DYLLPQNGGV KKAFQDMESA 241 LRENRMTLEA IKTTQADRDL FKHLITESTN YVAADYMRHA NDRRNKLDKT LSLRSELFGS 301 RETLVEQNNL LNRVQEELEL LIESESALEQ DYQAASDHLQ LVQNALRQQE KIERYQEDLE 361 ELSERLEEQM MVVEEAQERV MMVEEQATVA EEEVDSLKTQ LADYQQALDV QQTRALQYQQ 421 AVQALEKAKQ LLGDDSLTAE SAQALVSELK TKESESTNAL LSVKHKLDMS SAAAEQFETA 481 LKLVQSIVGQ VERKDASEHA KTAIAKARES QQVAQNEQQW RAQHRDLERS LNQQRQAREL 541 VNEYQKQFHV ELTDEITFEQ ERERHAMQID SLEMTQEDVR EQRSEQRRLE QDAAAEINKL 601 EAIAPTWIAA NDALEKLREQ SGAELEDSQS VMSQMQVVLE QEKTLSLAKD KLAERRSQLD 661 SEIERLASPG GSNDPRLKGL ADTLGGVLLS EIYDDITIDD APYFSAMYGP ARHAIVVSDL 721 SGIEEKLVEL DDCPEDLYII EGDIDAFDDS SFDAEELEGA VCVRMNDRQM RYSRLPEIPL 781 FGRAAREQRL ELLRNEREEV VEKHAKAAFD SQKMQRLYQA FNQFVASHIQ VAFEADPEQA 841 LATIRDKRNQ ITRVLADLDA KEQQQRSLLQ NSKQALSSLD KLAPNMALIE DESLQARFDE 901 LEEKIAQLSE AKAFLTNHAK AVEELEKVAV ALDADPEQFD ALEAEYKAAD EQLQDLKKQI 961 FALSDLVERR HYFAYSDSVD LLNKSSELSE QLKAKLVQAE QMRTRSREEL KQSQGQMNQY 1021 NQVLVSLKSS HQAKLETVQE FKQELQEFGV NADEGAEERA MRRRDELHER LHTSRSRKSE 1081 YERTITSTEL EMKGLAKRLK KVQKEYVELR TFVVAAKAGW CSVLRLAREN DVERRLHKRE 1141 LAYMSADELR SMSDKSLGAL RIAVANNDDL RDALRLSEDN TRPERKVLFY IAVYQHLRER 1201 IRQDIIRTDD PVEAIEEMEV ELARLTEELT QRENRLAISS ESVASIIKKT IQREQNRIRM 1261 LNQGLSNISF GQVKGVRLNV KIRESHEVLL NGLATQQEQH KDLFESTRFT FSEAMAKLFQ 1321 RVNPHIDMGQ RSPQVLGEEL LDYRNYLELS VEVNRGTDGW LQAESGALST GEAIGTGQSI 1381 LLMVVQSWEE ESRRLRSKDI VPCRLLFLDE AARLDAKSIA TLFELCDRLD MQLLIAAPEN 1441 ISPEKGTTYK LVRKVFKDHE HVHVVGLRGF GQTDKPKTEA QEMIEEFES //