LOCUS ABE40086.1 1151 aa PRT BCT 28-JAN-2014
DEFINITION Rhodopseudomonas palustris BisB5 DNA polymerase III, alpha
subunit protein.
ACCESSION CP000283-2846
PROTEIN_ID ABE40086.1
SOURCE Rhodopseudomonas palustris BisB5
ORGANISM Rhodopseudomonas palustris BisB5
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
Nitrobacteraceae; Rhodopseudomonas.
REFERENCE 1 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Rhodopseudomonas palustris BisB5
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4892717)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
Oda,Y., Harwood,C.S. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
JGI Project ID: 4000372
Source DNA and bacteria available from Caroline S. Harwood
(csh5@u.washington.edu)
Contacts: Caroline S. Harwood (csh5@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
FEATURES Qualifiers
source /organism="Rhodopseudomonas palustris BisB5"
/mol_type="genomic DNA"
/strain="BisB5"
/db_xref="taxon:316057"
protein /locus_tag="RPD_2858"
/EC_number="2.7.7.7"
/transl_table=11
/db_xref="InterPro:IPR003141"
/db_xref="InterPro:IPR004013"
/db_xref="InterPro:IPR004365"
/db_xref="InterPro:IPR004805"
/db_xref="InterPro:IPR011708"
BEGIN
1 MSNAGFVHLH VHSAYSLLKG SMKIARLAEL AKADHQPALA LTDTDNMFGA LEFSDKLAGS
61 GIQPIVGLEL GIDFGDQDPN SRNTAVAAPS RIVLLATRER GYRSLMRLNS RAFLETPVNQ
121 PPHIKFDWLD GETEDVIALT GGPDGPISLA MLTDPALGRL RCERLAQAFG DRLYVELQRH
181 NTDFERRAEA GLIDVAYDMG LPLVATNEPH FATSDDFEAH DALLCIASGK LIAETDRVQL
241 TPDHRFKTRA EMAVLFADLP EALASTVEIA QRCAYRPLTR KPILPLFTVG ASVNDAEEAA
301 AAEAAELRRQ AEQGLADRMR IHGLSQGMSE EDYRKRLAFE LDVITRMKYA GYFLIVSDFI
361 KWAKAHGIPV GPGRGSGAGS LVAYSLTITD LDPIRFGLLF ERFLNPERVS MPDFDIDFCQ
421 DRRGEVIEYV QQRYGRDQVA QIITFGTLQA RGVLRDVGRV LQMPYGQVDK LTKLVPQNPA
481 APVSLKQAIE SEPKLQAFRD EDPVVARAFD IAQKLEGLTR HASTHAAGIV IGDRPLSDLV
541 PMYRDPKSDM PVTQFNMKWV EPAGLVKFDF LGLKTLTVLD VAVKLLKQRN IHIDLATLGI
601 EDAPSYQMLA RGDVVGVFQV ESQGMRRALV DMRPDRFEDI IALVALYRPG PMANIPTYCA
661 RKHGDEEPEY LHPMLEPILK ETFGVIIYQE QVMQIAQVMA GYSLGEADLL RRAMGKKIRA
721 EMEKQRAIFV EGATRNGVPK DAADTIFDLL AKFADYGFNK SHAAAYALVS YHTAYMKAHY
781 PVEFIAASMT LDLNNTDKLS EFRAEAQRLG IKVEAPSVNR SGPTFEVGEN TIYYALAGLK
841 GVGQHAVQMI VEARGDKPFS SLADFAARVN PRAINKRVIE SLAAAGAFDC LDPNRARVFA
901 GADAIIAACQ RSHEAATSGQ NDMFGGLADA PSIVLPQVEP WLPAERLRRE YDAIGFFLSG
961 HPLDDYATAL KRLRVQSWSD FCKAVKSGAT AGKVAATVVS RMERRTKTGN KMGIMGLSDP
1021 TGHFEAVLFS EGLAQYREVL EPGAAVLLQL GAELQGEDVR ARVLHAEPLD AAAAKTQKGL
1081 RIFLRDTKPL DSISKRLQPP ETKVAGGNIA LVLRLDPQTE VEFEIPGRFQ VSPQIAGAIK
1141 AVIGVEHVET L
//