LOCUS AAL19248.1 1364 aa PRT BCT 24-JUL-2018
DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2 putative RHS-family protein protein.
ACCESSION AE006468-284
PROTEIN_ID AAL19248.1
SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4857450)
AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium
LT2
JOURNAL Nature 413 (6858), 852-856 (2001)
PUBMED 11677609
REFERENCE 2 (bases 1 to 4857450)
CONSRTM The Salmonella typhimurium Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of
Genetics, Washington University School of Medicine, 4444 Forest
Park Boulevard, St. Louis, MO 63108, USA
REFERENCE 3 (bases 1 to 4857450)
AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
SanMiguel,P. and Csonka,L.
TITLE Direct Submission
JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular
Genetics, University of California, Irvine, CA 92697, USA
REMARK Sequence update by submitter
COMMENT On Jan 13, 2016 this sequence version replaced AE006468.1.
Supported by NIH grant 5U 01 AI43283
Coding sequences below are predicted from manually evaluated
computer analysis, using similarity information and the programs;
GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
GeneMark; http://opal.biology.gatech.edu/GeneMark/
EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
and Pedro Romero and Peter Karp at EcoCyc;
http://ecocyc.PangeaSystems.com/ecocyc/
The analyses of ribosome binding sites and promoter binding sites
were kindly provided by Heladia Salgado, Julio Collado-Vides and
ReguonDB;
http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
This sequence was finished as follows unless otherwise noted: all
regions were double stranded, sequenced with an alternate
chemistries or covered by high quality data (i.e., phred quality >=
30); an attempt was made to resolve all sequencing problems, such
as compressions and repeats; all regions were covered by sequence
from more than one m13 subclone.
FEATURES Qualifiers
source /organism="Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2"
/mol_type="genomic DNA"
/strain="LT2"
/serovar="Typhimurium"
/sub_species="enterica"
/culture_collection="ATCC:700720"
/culture_collection="SGSC:1412"
/type_material="type strain of Salmonella enterica"
/db_xref="taxon:99287"
/focus
source /organism="Salmonella phage Fels-1"
/mol_type="genomic DNA"
/db_xref="taxon:128975"
source /organism="Phage Gifsy-2"
/mol_type="genomic DNA"
/db_xref="taxon:129862"
source /organism="Phage Gifsy-1"
/mol_type="genomic DNA"
/db_xref="taxon:129861"
source /organism="Salmonella virus Fels2"
/mol_type="genomic DNA"
/db_xref="taxon:194701"
protein /locus_tag="STM0291"
/note="similar to E. coli rhsD protein in rhs element
(AAC73599.1); Blastp hit to AAC73599.1 (1426 aa), 27%
identity in aa 315 - 985, 46% identity in aa 1151 - 1261,
25% identity in aa 297 - 788, 24% identity in aa 346 -
870, 22-1073758628dentity in aa 465 - 904, 26% identity in
aa 317 - 724, 32-1073758654dentity in aa 4 - 143, 24%
identity in aa 232 - 605, 21% identity in aa 562 - 970,
23% identity in aa 318 - 755, 32% identity in aa 974 -
1076, 26% identity in aa 935 - 1051, 22% identity in aa
358 - 540, 37% identity in aa 1 - 32, 31-1073758588dentity
in aa 1041 - 1099, 26% identity in aa 1000 - 1083,
30-1073758532dentity in aa 943 - 1025, 27% identity in aa
1172 - 1193, 32% identity in aa 1211 - 1235, 63% identity
in aa 1393 - 1403, 28% identity in aa 1175 - 1210"
/transl_table=11
BEGIN
1 MYEAARVDDP IYHTSALAGF LIGAIIGIAI IALAAFAFFS CGFLAGLILG FMADQIASGV
61 LQLGEAIGRS IHHTAGKILT GSENVSTNSR PAARAVLSTV KCDNHIAEKR IAQGSENIYI
121 NSQPAARKDD HTECDAVIED GSPNVFLGGG TQTVLEISSE IPDWLRKVVD VLFVVASLLG
181 GLAGAWRQAA KLGTKFGTKC AAKFIGGELV GMAVGEAISG LFSNPVDVTT GQKILLPETD
241 FTLPGRLPVT CSRFYASHLE TVGLLGRGWR LNWETSLRDD DEHITLTGVQ GRELRYPKTM
301 LTPGHQIFDP EEQLYLSRLH DGRYVLHYTD RSYYVFGDFD SDGMAYLLFM ETPHRQRIVF
361 GHEGGRLVRI ASSSGHHLLL HRTQTPAGER LSRIELVQGG TRGNLVEYRY DDNGQLTGVV
421 NRAGTQVRQF AYENGLMTAH SNATGFTCRY RWQELDGAPR VTEHDTSDGE HYRFDYDFAA
481 GTTTVTGRQG ETWQWWYDRE TYITAHRTPG GGMYRFTYNE DHFPVNIELP GGRTVAYEYD
541 IQNRVVKTTD PEGRVTQTQW NGEFDEITRT ALDDDAVWKT QYNAHGQPVQ ETDPEGRVTQ
601 YAYDEQGQMC SRTDAAGGTV VTAFDSRGQM TRYTDCSGRS TGYDHDEDGN LTRVTDAEGK
661 VVRISYNRLG LPETVNSPGK QQDRYTWNAL GLMSSHRRIT GSVESWRYTP RGLLAAHTDE
721 EKRETRWQYT PEGRVAALTN GNGAQYRFSH DADGRLVREV RPDGLSRTFI LDDSGYLTAI
781 QTTGTQGGVR RETQQRDALG RLLRTENEHG QRTFSYNRLD QITAVTLTPT EAGQQQHRMQ
841 ADTVRFEYDR SGWLTAEHAG NGSICYQRDA LGNPTDITLP DGQHLTHLYY GSGHLLQTAL
901 DGLTVSEYER DSLHRQIMRT QGQLATYSGY DDDGLLSWQR SLASGSAPVL PGQRPARQGC
961 VTSRDYYWNN HGEVGTIDDG LRGSVVYSYD RSGYLTGRSG QMYDHDRYYY DKAGNLLDNE
1021 GQGAVMSNRL PGCGRDRYGY NEWGELTTRR DQQLEWNAQG QLTRVISGNT ETHYGYDALG
1081 RRTRKATYGR HTGHTARSRT DFVWEGFRLL QENVQQQGWR TYLYDAEQPY TPVASVTGRG
1141 ESRQVWYYHT DVTGTPQEVT AADGTLVWAG YIRGFGENAA DISNSGAYFH QPLRLPGQYF
1201 DDETGLHYNL FRYYAPECGR FVSQDPIGLR GGLNLYQYAP NPLKYIDPLG LTATVGRWMG
1261 PAEYQQMLDT GTVVQSSTGT THVAYPADID AFGKQAKNGA MYVEFDVPEK SLVPTNEGWA
1321 KIVGPDSIEG RLAKRKGLPV PEMPTAENIT VRGEKINGEV EAKC
//