LOCUS AAL19248.1 1364 aa PRT BCT 24-JUL-2018 DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 putative RHS-family protein protein. ACCESSION AE006468-284 PROTEIN_ID AAL19248.1 SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4857450) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (bases 1 to 4857450) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA REFERENCE 3 (bases 1 to 4857450) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter COMMENT On Jan 13, 2016 this sequence version replaced AE006468.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. FEATURES Qualifiers source 2776826..2844430,2879238..4857450) /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /mol_type="genomic DNA" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus source /organism="Salmonella phage Fels-1" /mol_type="genomic DNA" /db_xref="taxon:128975" source /organism="Phage Gifsy-2" /mol_type="genomic DNA" /db_xref="taxon:129862" source /organism="Phage Gifsy-1" /mol_type="genomic DNA" /db_xref="taxon:129861" source /organism="Salmonella virus Fels2" /mol_type="genomic DNA" /db_xref="taxon:194701" protein /locus_tag="STM0291" /note="similar to E. coli rhsD protein in rhs element (AAC73599.1); Blastp hit to AAC73599.1 (1426 aa), 27% identity in aa 315 - 985, 46% identity in aa 1151 - 1261, 25% identity in aa 297 - 788, 24% identity in aa 346 - 870, 22-1073758628dentity in aa 465 - 904, 26% identity in aa 317 - 724, 32-1073758654dentity in aa 4 - 143, 24% identity in aa 232 - 605, 21% identity in aa 562 - 970, 23% identity in aa 318 - 755, 32% identity in aa 974 - 1076, 26% identity in aa 935 - 1051, 22% identity in aa 358 - 540, 37% identity in aa 1 - 32, 31-1073758588dentity in aa 1041 - 1099, 26% identity in aa 1000 - 1083, 30-1073758532dentity in aa 943 - 1025, 27% identity in aa 1172 - 1193, 32% identity in aa 1211 - 1235, 63% identity in aa 1393 - 1403, 28% identity in aa 1175 - 1210" /transl_table=11 BEGIN 1 MYEAARVDDP IYHTSALAGF LIGAIIGIAI IALAAFAFFS CGFLAGLILG FMADQIASGV 61 LQLGEAIGRS IHHTAGKILT GSENVSTNSR PAARAVLSTV KCDNHIAEKR IAQGSENIYI 121 NSQPAARKDD HTECDAVIED GSPNVFLGGG TQTVLEISSE IPDWLRKVVD VLFVVASLLG 181 GLAGAWRQAA KLGTKFGTKC AAKFIGGELV GMAVGEAISG LFSNPVDVTT GQKILLPETD 241 FTLPGRLPVT CSRFYASHLE TVGLLGRGWR LNWETSLRDD DEHITLTGVQ GRELRYPKTM 301 LTPGHQIFDP EEQLYLSRLH DGRYVLHYTD RSYYVFGDFD SDGMAYLLFM ETPHRQRIVF 361 GHEGGRLVRI ASSSGHHLLL HRTQTPAGER LSRIELVQGG TRGNLVEYRY DDNGQLTGVV 421 NRAGTQVRQF AYENGLMTAH SNATGFTCRY RWQELDGAPR VTEHDTSDGE HYRFDYDFAA 481 GTTTVTGRQG ETWQWWYDRE TYITAHRTPG GGMYRFTYNE DHFPVNIELP GGRTVAYEYD 541 IQNRVVKTTD PEGRVTQTQW NGEFDEITRT ALDDDAVWKT QYNAHGQPVQ ETDPEGRVTQ 601 YAYDEQGQMC SRTDAAGGTV VTAFDSRGQM TRYTDCSGRS TGYDHDEDGN LTRVTDAEGK 661 VVRISYNRLG LPETVNSPGK QQDRYTWNAL GLMSSHRRIT GSVESWRYTP RGLLAAHTDE 721 EKRETRWQYT PEGRVAALTN GNGAQYRFSH DADGRLVREV RPDGLSRTFI LDDSGYLTAI 781 QTTGTQGGVR RETQQRDALG RLLRTENEHG QRTFSYNRLD QITAVTLTPT EAGQQQHRMQ 841 ADTVRFEYDR SGWLTAEHAG NGSICYQRDA LGNPTDITLP DGQHLTHLYY GSGHLLQTAL 901 DGLTVSEYER DSLHRQIMRT QGQLATYSGY DDDGLLSWQR SLASGSAPVL PGQRPARQGC 961 VTSRDYYWNN HGEVGTIDDG LRGSVVYSYD RSGYLTGRSG QMYDHDRYYY DKAGNLLDNE 1021 GQGAVMSNRL PGCGRDRYGY NEWGELTTRR DQQLEWNAQG QLTRVISGNT ETHYGYDALG 1081 RRTRKATYGR HTGHTARSRT DFVWEGFRLL QENVQQQGWR TYLYDAEQPY TPVASVTGRG 1141 ESRQVWYYHT DVTGTPQEVT AADGTLVWAG YIRGFGENAA DISNSGAYFH QPLRLPGQYF 1201 DDETGLHYNL FRYYAPECGR FVSQDPIGLR GGLNLYQYAP NPLKYIDPLG LTATVGRWMG 1261 PAEYQQMLDT GTVVQSSTGT THVAYPADID AFGKQAKNGA MYVEFDVPEK SLVPTNEGWA 1321 KIVGPDSIEG RLAKRKGLPV PEMPTAENIT VRGEKINGEV EAKC //