LOCUS CK335260 562 bp mRNA linear EST 12-MAY-2010 DEFINITION H3157F09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3157F09 5', mRNA sequence. ACCESSION CK335260 VERSION CK335260.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 562) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3157 row: F column: 09 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..562 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3157F09-5" /db_xref="taxon:10090" /clone="H3157F09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 135 a 153 c 118 g 156 t ORIGIN 1 tgtttctaga ccagtttctt ctgacccccc ccccccccca tcccataaat gatatcatcc 61 taacattgag agtgtcgtca tcagtgagga gcagtgtctc ctctctgcct cttgctatcc 121 aaatgggacc agtccccttt gatccctctt cctctgcaca gtgggagggc accacacagt 181 ctatgcaact gtgtcccaag gactctggcc ctgtctcccc actgcctgtg tgcagaatac 241 acaacagggg aggggaggga gggaagctca aagtgaagcc agtgctggaa acacttctac 301 attcttcgtg gatgctcacc atgtacactg agaagactgc atggcagagc tgagctgagc 361 tgctgcccct ctgagtggat acaggcaggc agcatgctgc tctgcacagg aaaccactcc 421 tccacatgca ggtgattcga tttcacaaac agttgttccc ctgatttata tattttttct 481 ttctagaata tctgtacagt ttccttaatt tatagaaaca attgtcattt ttaaaatttc 541 caaagattct gatatcgctg tt //