LOCUS CK334961 571 bp mRNA linear EST 12-MAY-2010 DEFINITION H3127C08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3127C08 5', mRNA sequence. ACCESSION CK334961 VERSION CK334961.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 571) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3127 row: C column: 08 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..571 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3127C08-5" /db_xref="taxon:10090" /clone="H3127C08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 97 c 89 g 226 t ORIGIN 1 ctggcttggc agcaagtgtc tttaccactg agccttcatc gttggccctt agatgtttaa 61 taaacactca tagtgtcctt tctgtgatta gcctgaattt taaataagac ttaacaaact 121 gtttctctta gtccttatat ataacctttt gttttttaat ggctattagc attgattgat 181 catagttata tggtttgtat ttatatcatt tgatgctttt attgatagga tttttgtgag 241 gtttcagatt aatataatag tcaaagcttt agttagctct ttttgattat ctctttaaaa 301 ttgacactta aaaggattta cacctattta acagtactac tcgattctgc tctattgagc 361 actaacaatt aacaacagtc atttttaatg gcaacaagct ggtaactttg attagacaca 421 catggtccta agtctaatta ccaataagct gtttggtctt ctgtatttgc tcatcacaac 481 agactacgga ttttttgttt tgtttttaga tttcccaagg aaaattatac tcatctaatt 541 gtaccttgtg ccctgaaagt atctgatgag c //