LOCUS CK334890 548 bp mRNA linear EST 12-MAY-2010 DEFINITION H3118E08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3118E08 5', mRNA sequence. ACCESSION CK334890 VERSION CK334890.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 548) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3118 row: E column: 08 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..548 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3118E08-5" /db_xref="taxon:10090" /clone="H3118E08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 154 a 119 c 131 g 144 t ORIGIN 1 tcttcatcat ctttttttga agaatttggc aagctcctga gggagacaga tgaaatggac 61 agcttccacg atgtgacctt tcaagttggc aatagacact tccccgcaca taaatacatt 121 ttggccgtgc gctctgactt cttccagaag ttgtttcttt cagatggctc ttctttagag 181 ctgacggatg tttaccagaa agacgaagat gctgctggct gccatctctt tgtggtggag 241 aaagtccatc ctgacttgtt cgaatacctc ttacagttca tgtacacaga tacctgtgac 301 ttgttaactc atggcttcaa accaagaatg atcgtgaaga gaaaggcaga agactgtgag 361 ggctccccag attctcatct gcacactgtg aattgccatg tggatgataa acagaagtca 421 gcatttgagg tgtacagaag caaccaggcc cacacactta gtgaacggca gaagagcaaa 481 cccaaatctt ctaagaaggg aaaaggtgtt ggggacgacg accctgtaag gatgttgcaa 541 agtgttgc //