LOCUS CK334792 599 bp mRNA linear EST 12-MAY-2010 DEFINITION H3111C03-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3111C03 5', mRNA sequence. ACCESSION CK334792 VERSION CK334792.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 599) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3111 row: C column: 03 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..599 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3111C03-5" /db_xref="taxon:10090" /clone="H3111C03" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 167 a 110 c 119 g 203 t ORIGIN 1 cagaaaactg atggagttaa agttaatgga atgattgtat tttgaggtat ttgatgtttt 61 tatcaagaca gggtctcatg tagtccaagc agccttaaac tcatgatctc cttccctctg 121 ccttttagac actgggattg gtggcatgag tcaccatgtc cagcttcttt gtggtttgtt 181 tgatgtttct gttgtcctta gagactcatc taaggtatca ctgcttctag agccagcgat 241 tgcataaggt gaggaacaag acactttatt aaattcctca gggcagtaca gcaagtaaac 301 atagttgatc ctgataagcc acgtgatagg atttactccc tccccgcaca cactgtttaa 361 aaatgcttta tctcaaatgt tgtgtatctg aagagagata tatctgcaga ttatcacaaa 421 tgttagtctt agtaaataat tagtggggga ggtgcagaac ttaggattaa cctgaagcct 481 ccttaagatg tattaggtaa ttcctctttt agtattaaga tgctatttaa ataaaacagt 541 tattttgatc agcttcttct ttctctctag gccccttgat tgaatttaaa cagtctcct //