LOCUS CK334778 659 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109F08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109F08 5', mRNA sequence. ACCESSION CK334778 VERSION CK334778.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 659) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3109 row: F column: 08 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..659 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109F08-5" /db_xref="taxon:10090" /clone="H3109F08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 163 a 155 c 104 g 237 t ORIGIN 1 gcctctttgg acaaagccct tcaatggatt ctggttgttc tggaataaaa tctgtattct 61 cattgcctgc aggaccagac acattggttc ctgctccttc tctgcctgtg tctcctgcca 121 ttctccttac atgctcagct ctagctttac tagccacttt gtttttctta agattatcat 181 tatcattgtt tctgtttgaa atgcttaggc tccaaaatat atccccaact tgcacttacg 241 tatgtctgtg gagagacctt gaccactgat ctcgcatcta atccctgtct ctcatttcat 301 actctaatga ttctctcctc tttgcccctg accttgcttt agttttttct gccccctaga 361 cacctgccat ttcctcattt gtgtagtagc agcagtctac cctgcctctc cctagagtag 421 aaattgaaca aggacataga attttctgac tcatctgctg taagacatga taacactcga 481 aatttgaatg actgaaggta taaatatatt taaccttaag atggatcatt ttgcatttct 541 atgctttgat tccataagta taaaatgaag ggcttattca aagtccaaga gcatttattt 601 taacctcaga tgatcattcc cttatagttg taagttcaag gcatttaact ttttaagtg //