LOCUS CK334774 568 bp mRNA linear EST 12-MAY-2010 DEFINITION H3108F06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3108F06 5', mRNA sequence. ACCESSION CK334774 VERSION CK334774.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 568) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3108 row: F column: 06 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..568 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3108F06-5" /db_xref="taxon:10090" /clone="H3108F06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 105 a 160 c 181 g 122 t ORIGIN 1 gcctccgact tcctcgagtg gtgggtcatc gagctgcagg actgcaaggc tgactgcaac 61 ctgctgccca tggtcatctt cagtgacaag gtcagcccac ctagcctggg cttcctggcc 121 ggctacggga ttgtggggct gtacgtctcc atcgtgctgg tggttggcaa gtttgtgcgg 181 ggcttcttca gcgagatctc tcactccatc atgttcgagg aactgccgtg tgtggaccgc 241 atcctcaagc tgtgccagga catcttcttg gtgcgcgaga cccgggagct ggagctggag 301 gaggagctat acgccaagct catcttcctg taccgatctc cagagaccat gattaagtgg 361 acacgtgaga gggagtagga gcccaggccc tgggcaccgg gaatgaagga gctgcctcag 421 ggcagcatga ccaccagggc tggcagagct ccttgggttg gagtgtagct gcccaaggca 481 cgagctgtga caggtcctgg cctacgtaag ccctgatgat gctgctgtca aagggacgct 541 gtgtccctac ccattgcgtc cctgccag //