LOCUS CK334655 581 bp mRNA linear EST 12-MAY-2010 DEFINITION H3079A06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3079A06 5', mRNA sequence. ACCESSION CK334655 VERSION CK334655.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 581) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3079 row: A column: 06 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..581 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3079A06-5" /db_xref="taxon:10090" /clone="H3079A06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 151 a 139 c 151 g 140 t ORIGIN 1 atcgttaagg aagtcagcac ctacattaag aaaattggct acaaccctga cacagtagca 61 tttgtgccaa tttctggttg gaatggtgac aacatgctgg agccaagtgc taatatgcct 121 tggttcaagg gatggaaagt cacccgcaaa gatggcagtg ccagtggcac cacgctgctg 181 gaagctttgg atcgtatcct accaccaact cgtccaactg acaagcccct gcgactgccc 241 ctccaggatg tctataaaat tggaggcatt ggcactgtcc ctgtgggccg agtggagact 301 ggtgttctca agcctggcat ggtggttacc tttgctccag tcaatgtaac aactgaagtc 361 aagtctgttg aaatgcacca tgaagctttg agtgaagctc ttcctgggga caatgtgggc 421 ttcaatgtaa agaacgtgtc ggtcaaagat gttagacgag gcaatgttgc tggtgacagc 481 aaaaacgacc caccaatgga agcagctggc ttcactgctc aggtgattat cctgaaccat 541 ccaggccaaa tcagtgctgg ctacgctcct gttctggatt g //