LOCUS CK334533 706 bp mRNA linear EST 12-MAY-2010 DEFINITION H3047D08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3047D08 5', mRNA sequence. ACCESSION CK334533 VERSION CK334533.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 706) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3047 row: D column: 08 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..706 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3047D08-5" /db_xref="taxon:10090" /clone="H3047D08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 152 a 138 c 163 g 253 t ORIGIN 1 gacaagtcca gaccaagccc tacttcctta aacatagtga aacttcccca aaataaagct 61 gctccaatca cagcagcttg gtattggcac aagtttagat tttggtttat aatctttttt 121 cctccttagt gtctgttgat aatagcaaga gcatagtaaa aaacatattc ttgacatttt 181 ttttttcgag acagggtttc tttctctgtg tagccctggc tgtcctactc actttgtaga 241 ccaggctggc ctcaaactca gaaatctgcc tgcctctgcc tcctgagtgc tgggattaaa 301 ggtatgcgcc accacacccg gcttcatact tgacattttt aatttaattt ttattgtggt 361 aacaatgtat gtggtgtaaa attggccatt tttaatcttg cttattttat gttgttgaag 421 gcacattttt ggtttgtgta tatgtgtatg gggtgtgtgt gtgtgtgtgt gtgtgtgtat 481 gtatgggtgg ctcatgcata catgcggttc tgggaaagag ctcatgctgt cttctgttag 541 tgttcattgt acatattgag aggttgggtc tcagagcttg tgctgcttca gctagtctag 601 gttgccaatt tgttccaggg tctcttacct ctgttcccgc cttgctggaa ttactgacag 661 gccatcatgt gtcgctggta tttacatgag tgctagtgcc aggtgg //