LOCUS CK334523 597 bp mRNA linear EST 12-MAY-2010 DEFINITION H3045E09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3045E09 5', mRNA sequence. ACCESSION CK334523 VERSION CK334523.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 597) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3045 row: E column: 09 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..597 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3045E09-5" /db_xref="taxon:10090" /clone="H3045E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 127 a 149 c 122 g 199 t ORIGIN 1 catgcatgtg tgtgggtatg catgtgtcca ttgaggccag gtgatgatgt caggtattct 61 cttcagtaac tctccacctt gtgtttggag gcaggctgcc tcactgaagc ctgagccttg 121 ttaacttgtt ttgactgatt gtccatcaag cccatgacat ctatctgctt gtgtctccta 181 ttctacctct tgagttacag aagtgttctg tcattcctag ctttttacat gtgttccaaa 241 ggatggagtt taggtcctca accttgtgtg ggaagggtct gactgcctgg gttatccccc 301 cagcccgtct ttagcatctt tgtgagatgg atggacacat taaaaaggct attctaccag 361 ggttaatact gtatttccaa actctgacaa gcatttttct cattctctaa tggaaaggtt 421 tttctttgcc actcccctcc ctcaaacctt tctctcttca gtgtcacaaa ttcatgacat 481 catcttgcct gcacatggta tgtttgtgag aattccaaac agtgagcttg ctcctctgca 541 ccagacatga gcctgagaca ttttctctgt cccctccccc agaagactat tatgtgc //