LOCUS CK334091 589 bp mRNA linear EST 12-MAY-2010 DEFINITION H3001A01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3001A01 5', mRNA sequence. ACCESSION CK334091 VERSION CK334091.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 589) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3001 row: A column: 01 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..589 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3001A01-5" /db_xref="taxon:10090" /clone="H3001A01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 156 a 100 c 116 g 217 t ORIGIN 1 agagaatggt aaagaaataa aatgagataa agtgttttaa aattgagctt tcttcttaga 61 acttagaaac attgatgttc agactagcag agctcagctt tttaaatttt cttagtttta 121 atctttaaaa tagtatatga tgatgtcagt tattttttat tgtttgatta tattaaaata 181 acttgaaaat ttttaacgtt agccattttg gtacactgac ttctaatgag aatttagggg 241 cagtctgctt gcttttgctt gttcattgtt gtgtttttgt tttttgtttt tcagacaggt 301 tctgactatg tagatcaggc tagcctcaca cttacagaga ccttcctgcc tctgctttcc 361 aaagctaggg tttaaggtac ccttctccct attgactgat atgagaatct tttttatgtc 421 atgtgcttgc attattttgc gttactgtta agaattgaaa atgatggtgc tggagagatg 481 gctcagcggt taagagcacc gactgctctt ccagaggtcc tgagttcaaa tcccagcaac 541 cacatggtgg ctcacagcca tctgcaatga gatctgatgc cctcttctg //