LOCUS BG088706 635 bp mRNA linear EST 26-JAN-2001 DEFINITION H3156E08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3156E08 5', mRNA sequence. ACCESSION BG088706 VERSION BG088706.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 635) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3156E08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3156 row: E column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..635 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3156E08-5" /db_xref="taxon:10090" /clone="H3156E08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 164 a 109 c 132 g 230 t ORIGIN 1 tcttaaatag gattgcgctg ttatccctag ggtaacttgg tccgttgatc aaaatatatc 61 tgggtcaata agatatgttg attttacttt gacttgtaag tctaggttat aatcattcgg 121 aggatttttt attctccgag gtcaccccaa ccgaaatttc aaacttatac tatagttttt 181 gggccattag gtttaataaa ttaaatagat aagttatata atttaagctc catagggtct 241 tctcgtctta ttattatatt tcagcctctt cactgaaagg tcaatttcac tgattaaaga 301 taagagacag ttggaccctc gtttagccgt tcatgctagt ccctaattaa ggaacaagtg 361 actatgctac ctttgcacgg tcaggatacc gcggccgtta aactttagtc actgggcagg 421 cagtgcctct aatacttgta atgctagagg tgatgttttt ggtaaacagg cggggttctt 481 gtttgccgag ttccttttat ctttttggat ctttccttta ggcattccgg tgttgggtta 541 acagagaagt tataggtgga ttatttatag tgtgattatt gcctatagtc tgattaacta 601 acaatggtta tccgagttgt tatacgcgta tgcct //