LOCUS BG088688 684 bp mRNA linear EST 12-MAY-2010 DEFINITION H3156D01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3156D01 5', mRNA sequence. ACCESSION BG088688 VERSION BG088688.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 684) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088688.1. Other_ESTs: H3156D01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3156 row: D column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..684 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3156D01-5" /db_xref="taxon:10090" /clone="H3156D01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 162 a 164 c 159 g 199 t ORIGIN 1 ccttggcagg agccaaggtc tatggttttt tgagatgaag catttgttac agataattgg 61 gtagagtgga gtgtatctgc ttaaggggtg aagtttgttt tttcttgtct ctgaaaacta 121 agccctcaat gaacgactta attaactcac tgcattagtc tccataattg gtctcgctgg 181 acacgtgcac agctgtggct ctcagcagct tccctgcagc gccactgggc taagggggag 241 cggccattta tgttcatgtt cacaggaagg tcttctgctg ctccatccta gacctgcccc 301 agtgcccagc agtcaccctt cccctctagc tacagagtcc aggccactgg accagccaac 361 atctgggctg ctgcagggag gcctggccta ttttttctta aaacatattt tataaaacta 421 caacctgatc taccctccag ggcctcctca gttccactga ttgaaatttt cttcttccat 481 ggactaagtc catctaggaa ggaaaaatga ggagaaagag tgtggtatcc tccttctaag 541 acagtgaccg atttctctgg gttgggccaa gactttattt actgcatcat gcatgactca 601 ctcaggggcc cttggggccc tcttctctat gatatgaata ctgtgtgtgt gagttgaagc 661 attacctgat attaaatgaa ggat //