LOCUS BG088687 679 bp mRNA linear EST 12-MAY-2010 DEFINITION H3156C12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3156C12 5', mRNA sequence. ACCESSION BG088687 VERSION BG088687.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 679) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088687.1. Other_ESTs: H3156C12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3156 row: C column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..679 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3156C12-5" /db_xref="taxon:10090" /clone="H3156C12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 165 a 161 c 154 g 199 t ORIGIN 1 ggcaggcgct gtgttccaat caccagaggt cttagggtcc cgtggggagt cccgtgtggg 61 tccttgcggg tgttgggcaa gactctgctg gcaaggaagc ccggggctcg agtcaccgtt 121 tgccatctct ggaattctgt ctattgtcac agagaaaaag atgactaagc ctttggttca 181 cagcagccta gccctgagca tcctgagtgt cctctctgct cttacaggca tcgctattct 241 ctctgtcagt ttggctgctt tagagcctgc cttgcagcaa tgtaagctgg ctttcacaca 301 actagacaca acccaagatg cttatcattt ctttagccct gagccattaa acagctgctt 361 cgtggccaaa gctgctctga ctggagtctt ttcactgatg ctaatcagca gtgtgttgga 421 gcttggcctg gctgtcctca ctgccacact gtggtggaaa cagagctcct ctgctttctc 481 tgggaatgtg attttcctgt ctcagaactc aaagaataaa tccagtgtat cttcagagtc 541 actttgtaac cctacatatg aaaacatatt gacttcataa gaattaagta gaggttatat 601 agcagaaaaa tctgtcttta acatgattta gaaaagccat ttactgtgtg acaacaatgc 661 ttaatatctt aatatctta //