LOCUS BG088236 630 bp mRNA linear EST 12-MAY-2010 DEFINITION H3150D11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3150D11 5', mRNA sequence. ACCESSION BG088236 VERSION BG088236.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 630) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088236.1. Other_ESTs: H3150D11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3150 row: D column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..630 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3150D11-5" /db_xref="taxon:10090" /clone="H3150D11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 164 a 145 c 130 g 191 t ORIGIN 1 gttctcagca attatggttg cctttggggg ttaaatttga ccatatacta gtaaaaacaa 61 tttctccttg agagaggtga ccatctcaaa atccaccaca ggaaaaacag cccactgtat 121 atgtaccagc atgcaactgt cactgacgtc ctttctctca tcctgttacg tgcagtcagt 181 tacgagtgag tagattttcc atggcaacgg tttcttctac cagaggtggt tttccagttc 241 ccgtttcctt tgcgctcctc tttccttgtt tgtcctgaga aattgactag agttgctgcc 301 tcttccccat cttactctgc tcttcagacc ccctgtgtga ttcagagatg tgaacacgca 361 aaatacacgc agcattgccc cttcgatgtt ctcatcacat aacgttacct ctaaaaggga 421 aaatcattgc cccagttccc ctctcgtccg ttgtgtctca caaagatggg aagaccaaca 481 aaaatgcttc ttgatattac aacaatgtga ggagttacat ttaactaagt ctatagcttg 541 ggtaagaagg atcaggtcag tatgagttgg tttagtgaag agatgagcta gaaggattgc 601 atagttagca ctatgtcttt aactggtggg //