LOCUS BG088173 730 bp mRNA linear EST 12-MAY-2010 DEFINITION H3149E09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3149E09 5', mRNA sequence. ACCESSION BG088173 VERSION BG088173.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 730) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088173.1. Other_ESTs: H3149E09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3149 row: E column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..730 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3149E09-5" /db_xref="taxon:10090" /clone="H3149E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 183 a 156 c 207 g 184 t ORIGIN 1 gggaactttg agattctcag tctgaaaaga ctttgtccca taattccaaa gttgttggat 61 ttgccgatgc aagctctaaa ttgtgtgctg gcaggcgtga agccatcatt aggaatttgg 121 actccagaag ctgtgtgtgt catgaaagag atggtacaga acaggatggt cacagtgaga 181 gtggtgggca tgctggggac cagggccctg gtggagctca tcgacaagtc ggtggctcct 241 cacgtcagcg cttctaaagc tctcatagac tcgggctttg ccatcaaaga aaaggacgtg 301 gcagataaag gcagcagtat gcacacagcc agtgttccct tggccattga aggtccagca 361 gaggcgttgg agtggacgtg ggtggagttc actgttgacg agaccgtgga tgtggtggtc 421 tgcatgatgt acagtcccgg ggagttctac tgccactttc ttaaagatga tgccttagag 481 aagctcgatg acttgaatca gtccttagca gactactgtg cacaaaagcc gcccaatggc 541 tttaaggcag agatagggcg gccttgctgt gccttttttt caggtgacgg caactggtac 601 cgggctctag tcaaggagat cttaccaagt gggaatgtta aagtccactt tgtggattac 661 ggaaatgttg aagaagttac cacagaccaa ctccaggcga tattaccaca gttcttacta 721 cttccatttc //