LOCUS BG088143 694 bp mRNA linear EST 12-MAY-2010 DEFINITION H3149B09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3149B09 5', mRNA sequence. ACCESSION BG088143 VERSION BG088143.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 694) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088143.1. Other_ESTs: H3149B09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3149 row: B column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..694 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3149B09-5" /db_xref="taxon:10090" /clone="H3149B09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 172 a 141 c 107 g 274 t ORIGIN 1 aacttacagt attgtctgtc ttcagttggg ggtagtattt ttattgatct gctgctgttt 61 caataaataa ggcatagaaa tgtttaactt gaagggtctc tgcagttagt ctctactgaa 121 gttgtctttg acttttctaa agatgaatgc cttccttctc aatccttggc tttattcttt 181 ctcagtcaat ttggaaatta aagagtttag attgcttacc aattaaactt tggtctctgt 241 ttttgcattg ttaagttact ccttaactca tcttttcagt attctttttc tgtgttttcc 301 ttgatctgta ggtagttcct gcagttgcac ctttagaact tctatttctg catttattct 361 tctagataca ttactcactt cccatgactt tacttaccaa aagatttcta ggtcagtatt 421 ttaagccctc cctctcgttt aaaaaataac ttatttctgt ccatagaact tcttttattc 481 tttttggttt ttatagagac agggtttctc tgtgtagccc tggctgtcca ggaacttact 541 ctgtaaacca ggcctgcctc aaactcagag atctacctgt ctctgacttc agagtgctga 601 gattaaaggt gtgcgacaca acttccctgc agaacttttc taattaaaat aactgctacc 661 tcaaaagtat taactatttc taactcaaat ctta //