LOCUS BG088025 655 bp mRNA linear EST 12-MAY-2010 DEFINITION H3147F12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3147F12 5', mRNA sequence. ACCESSION BG088025 VERSION BG088025.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 655) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088025.1. Other_ESTs: H3147F12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3147 row: F column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..655 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3147F12-5" /db_xref="taxon:10090" /clone="H3147F12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 182 a 166 c 158 g 149 t ORIGIN 1 ggaacaggct actaaggttg gcgatctttg caatggcact gtgcctacaa atcgaaggtc 61 agcttttgat ctttgaagct ttatatagaa actccaacgc tgaaagaaag gtaaagagcc 121 catgcaccga ggagcctttt tagatagctc taagtgctgg aggagagcat gagaccatga 181 ggaggatgct tagtcctagg atactgctct cttcgcttcc aaatgcctca gctcagaaac 241 tgttcctgat agtgttaatt atctttgctt tctgggttgt cttcatgact tcaaaagacc 301 acacagagtt tatggttcac ttaaacaacc gcatcattct gagacgatgg agcatcttca 361 aggagttctt gcactcggaa gagcttaaga gcacaccagc ctccgtggag gcagagctgg 421 cagtcacagc aatcctggag aagctaaacc agcagatccc acccagacct ttccagaccc 481 atagcagcac caccagcgcc aaacagagca cagctaccat tcacaacccg cagcgtacct 541 actgcgtagg agaccagctg aacgtcttac tggtggccaa ggactatttt ggtaacagga 601 aggagtatgg tggggattcc ctaagagcca ggatgtcctc cccagccctg aaggc //