LOCUS BG088001 723 bp mRNA linear EST 12-MAY-2010 DEFINITION H3147D08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3147D08 5', mRNA sequence. ACCESSION BG088001 VERSION BG088001.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 723) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG088001.1. Other_ESTs: H3147D08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3147 row: D column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..723 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3147D08-5" /db_xref="taxon:10090" /clone="H3147D08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 142 a 180 c 135 g 266 t ORIGIN 1 atgcaaactc catctcaaaa ctactgtctt tcaccttccc aaatctctat cctcgtgtgc 61 ttcaagctct ataacaacca tatcatgagg tatttgcaaa ggaaaacatt ttctcccatg 121 atttgttttt tgttgttatt gttgttgggt tggggatttt ttttgtttgt ttcattgttt 181 tggttttggt tttgatgggg actggtcttt aagactgtca tttgatattt ttttacatca 241 gagtttatcc cacagtcccc catctctccc tcctccttcc ctccctgtct ccttctctct 301 ttctcactgt ctgtctctct ggttttcttt tgctgcttct tcccttctgg tttctggtag 361 caggcctcca ttgaactgtt gtaaaataca agaagtgtgg tcagtaagga gagttggggt 421 ggtgccttcc agcctgcccg ccagtccatc ctagacactc ccagaggctg ctagctccgc 481 ccctctggca tggctttcct ttcccatcgc cttcggaggc cattttgtct tgaagtcaat 541 gcatgctcgt gctgttcgac agtaacctac tctgccttct ccacctccga ggctgtgcat 601 tcatccaatt agtgtcatga atgtttcccc tttatttttt ccaataaaaa aaagcagtgg 661 gatgaaaatt gctttgatat atagcaggta tattgaagct attccatagc acttaactgt 721 agt //