LOCUS BG087386 624 bp mRNA linear EST 12-MAY-2010 DEFINITION H3139A01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3139A01 5', mRNA sequence. ACCESSION BG087386 VERSION BG087386.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 624) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG087386.1. Other_ESTs: H3139A01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3139 row: A column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..624 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3139A01-5" /db_xref="taxon:10090" /clone="H3139A01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 164 a 156 c 180 g 124 t ORIGIN 1 ctgagccttc ttcatgatag gagcttcaac tacaccgggg acagccaggc gcaggagctg 61 tgcctctatc tgaccaaggc agccagtgca ccttacttcg agatcctgga gaagtggatc 121 tataggggca tcattcatga cccatacagt gagttcatgg tggaggaaca cgagctgcgg 181 aaggagaaga tccaggagga ctacaacgac aagtactggg accagcgcta cactgtgctg 241 ccgcagcaga tcccatcctt cctgcagaag gtagcaggca agatcctcag cacaggaaaa 301 tacctaaatg tggtcagaga gtgtggtcat gatgtcacct gtcccgtagc caaagaaatc 361 atctataccc ttaaagagcg ggcatatgtg gagcagatag agaaggcgtt caattatgcc 421 agcaaagtgc tgctggactt cctcatggag gagaaggagc tggtggccca cctgaggtcc 481 atcaagcgct acttcctgat ggaccagggg gacttcttcg tgcatttcat ggacctgact 541 gaggaggagc tcaggaagcc agtggaggac atcatactca cacgcctgga ggccctgttg 601 gagctggccc tgcgaatgag cact //