LOCUS BG087303 605 bp mRNA linear EST 12-MAY-2010 DEFINITION H3138A05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3138A05 5', mRNA sequence. ACCESSION BG087303 VERSION BG087303.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 605) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG087303.1. Other_ESTs: H3138A05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3138 row: A column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..605 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3138A05-5" /db_xref="taxon:10090" /clone="H3138A05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 149 a 132 c 100 g 224 t ORIGIN 1 ggattatttc attgctctgg agtccggatg ctgactgtaa aagttgtgct gtctttacct 61 cagctccttc cttcaaactt atttcccctt gtaccagtca gtgtgcttag acatatgaac 121 ttttacacca ttcagtgtac ccagaagtat aaattttata ccaatcaatg tgcatagaaa 181 tatacataca tctcctacag ccctttatag tgagtctctt ccttccttcc ttgatctctg 241 gcgaacagtg gtttgttttc ttacgttagt gtttcctaac gttgtgtctg gcttcttcca 301 ctgagcattc aggaaaacca ctgacactgt atataaacca ctcgctgctt actaagggga 361 ttgttagact gaaagtactt ggacaagctt gcttcaccta cccactgatt tcatcagaca 421 ttaattttga ggtttgttca tcttttgagg gcctaagact aatatctttt attattcctt 481 taaactgcca gttgaataca aggctcattg aattattaag tatattcctt taagcttttt 541 atggagtttt cctgtctaaa ttttttgatt tgtttccatg caccagatat cctgatctgc 601 acctg //