LOCUS BG085611 668 bp mRNA linear EST 12-MAY-2010 DEFINITION H3115D09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3115D09 5', mRNA sequence. ACCESSION BG085611 VERSION BG085611.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 668) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG085611.1. Other_ESTs: H3115D09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3115 row: D column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..668 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3115D09-5" /db_xref="taxon:10090" /clone="H3115D09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 173 a 162 c 136 g 197 t ORIGIN 1 acctgcaaga ggggcctgcc atcgagtgcc agacataaat atggacttaa aacaagacta 61 gtgttaccct tttaacctag ggaagccagg tgctttgcca aattctgctt gtcttttgaa 121 ccctgcaccc aaatatgtag taaatccaaa ttctcatcat ctgaaatttc tcatatccta 181 agaaaagtgt tcactaattt taaatgtgca actctgtgct gcgagtctct aagaacctta 241 aaaaagtaac tgacaggcgg ggaccctcgg aagttacatt catcagtggg tcacgcacac 301 ttttgtatgt tgccagtctg attaaagccc tggtggtgca cagattttgc cagaaatgat 361 ttcctgttct gccaagagca atatggactt ttcatcccgt gttaggttag tgcagggctc 421 ttaggacctt gctagctttt ttcttccatc tggtttgccc gttgtttcac aagagccctc 481 agctacgcga agagtcaagc cataaccacg catctgctga tcattgcctg ccttgccttc 541 actgtgacta cagagttcaa agataatcct gtcttacttc cattgtacac ttgaactgtg 601 acagtgaccc acaatgtgac aatcagttac tgcttcctac agtgctgctg ctggtcagac 661 aagtgctt //