LOCUS BG084962 629 bp mRNA linear EST 12-MAY-2010 DEFINITION H3107A08-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3107A08 5', mRNA sequence. ACCESSION BG084962 VERSION BG084962.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 629) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084962.1. Other_ESTs: H3107A08-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3107 row: A column: 08 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..629 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3107A08-5" /db_xref="taxon:10090" /clone="H3107A08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 161 a 143 c 112 g 213 t ORIGIN 1 ctatgtgctc ccaaatttcc acaataaact ttctcatcca ccatacttag gatcaatcat 61 actccttttc tttatttctt tttttttccc attctgttta tccttttatg attcctgtga 121 attgggtatg gtatagtaga tttgcattac tttggaaaat atcccaccag ctcgctggtt 181 tgtgtgcaac aaggatttat ctcagttttg gcaactgaga agtccatgat gatgtagggg 241 cggctctttg tggtgcacac atggtgcctt tttctctatc ttcacacaat agaagcagca 301 aagggtccca ggctcttgtt aaggtttgct tctgttgtga gtggccagtc catccatata 361 gtctaatagt ttccccaatg ttctcccctc ctaattccca ataccttggg tactaggatt 421 tcaacatgtg aattgacagg aggacataag ccttcagacc ctggcagtta gttcactcag 481 ctcttccatt caccagcctg ctatttacta cacatttcct acttttaaaa ggaaacacag 541 taactccctg ccatcaacaa aacatgttta gtatgatgct gtcttggcag atgtagtata 601 gattaagaat aggaaaagat attccgtac //