LOCUS BG084407 539 bp mRNA linear EST 12-MAY-2010
DEFINITION H3100E07-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3100E07 5', mRNA sequence.
ACCESSION BG084407
VERSION BG084407.2
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 539)
AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X.,
Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H.,
Wood,W.H. III, Becker,K.G. and Ko,M.S.H.
TITLE Genome-wide expression profiling of mid-gestation placenta and
embryo using a 15,000 mouse developmental cDNA microarray
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000)
PUBMED 10922068
COMMENT On Jan 26, 2001 this sequence version replaced BG084407.1.
Other_ESTs: H3100E07-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3100 row: E column: 07
Seq primer: -21M13 Reverse
POLYA=No.
FEATURES Location/Qualifiers
source 1..539
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3100E07-5"
/db_xref="taxon:10090"
/clone="H3100E07"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 160 a 99 c 126 g 154 t
ORIGIN
1 ctgttttaat gttaaggagc atcagccagt gaacctgttt ggattttcca tcctgtagag
61 tgcaaaactt gtgccagtgg caaaagtggt tctttaaaaa aaaaaaagtc ccccttaact
121 cttccttaga tatacttggg tggttcctaa gggaaaggga agcacacaat catgggaacg
181 atagcccaga acaaaaagaa atcttgtctt accactgtgg attataggag aaactgggag
241 aaattatcct gctttctcta tggcctgatt ccagaagaga ctgatccaaa cattttatcg
301 gcagggaaac tcagtgcgtt tggcactgag acttaaatgc aaccagaatt gtcctcaagg
361 cccagccatt aaagcattgt ctctctagac cttgtgctat cttgtcagag agcttttcac
421 tgtgaggaag tatgggagtg gttgagtgta tgtgtgagat ctgttaggtt ggggataggt
481 tttctgttag ccaatattta aagagacctg caataaaaaa ttaccctgat ctgatagag
//