LOCUS BG084342 578 bp mRNA linear EST 12-MAY-2010 DEFINITION H3099E09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3099E09 5', mRNA sequence. ACCESSION BG084342 VERSION BG084342.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 578) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084342.1. Other_ESTs: H3099E09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3099 row: E column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..578 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3099E09-5" /db_xref="taxon:10090" /clone="H3099E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 189 a 111 c 133 g 145 t ORIGIN 1 agccagggcg gggtttggaa acatcttgct taagaccttg gaagtccagg agataccatc 61 atctgagtag gaacactgtt ttcagggtcc ttagagaata gacagacaca cagacacaag 121 gtctttggat acaagggaag gactagctgt tccttggggg tttcagacgg ttggtctgca 181 aaataagagt tacaggtgtc catagagcac ttgagggtag aagacagaaa atgccaaata 241 tcagcaggat atttcaaatt tatatgccaa gtaaaaaatg tcatgtccct gaagatgtca 301 cctgaactac tcaaaaggat tccaagaagt actaatttaa caggtgtgac taaggtagct 361 gaggggacac tgaagtgttt ctcaagtgtt tctgcacctt ggctgttgac actcgttctt 421 tgacagccta ctgaaggacc tggaagaaag aactcaaaca tctgtaggga taattaccca 481 aagctaataa tctatacaaa acaaaaacaa accaacccac aagccatttt cgttgtgtgt 541 tccagttaac ttgaggtact taatgatgaa ccattggc //