LOCUS BG084188 646 bp mRNA linear EST 12-MAY-2010 DEFINITION H3097D11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3097D11 5', mRNA sequence. ACCESSION BG084188 VERSION BG084188.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 646) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084188.1. Other_ESTs: H3097D11-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3097 row: D column: 11 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..646 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3097D11-5" /db_xref="taxon:10090" /clone="H3097D11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 186 a 144 c 131 g 185 t ORIGIN 1 ctggtttata gagaaagctt atttttccta aagttcctag accctagcta taaaacacga 61 agctgtcaaa ttatcagact gcaattgtat tttctcatag gaaagtcatt ggtgggaagt 121 tttattcttg gcaaaggcta ttggaaggct cccctgagct taatctggcc tgaagatgta 181 tttgtttcgc caagtattaa gaatttttaa ttggtattac cattttaaag tcgatagctt 241 ttttttttct tgtctatttc cagcttctct tgacaaagat ctggcaacaa cgtggcctac 301 tgcatctatg caaagaaacg agcaggcagt gcagaggccg tcctctttat agaagtgtgc 361 cacccatttc cagttggctg tcctcccgat ctggcaccgt tcccctttta cgtaacctgc 421 ctagcctcta caggcatcgg ccctgtgatc tctgggctag gcaaacagaa acggatccac 481 atggtgcaaa gggtccaaga atgacaccag agagttttcc cagccagaca agtgaccatc 541 taaagacaaa cagaaactgt tgaatccata tctcatactc aggcagaaat gccaataggt 601 caaaggttta catgtataaa aaagggattc caaatgacct cagaat //