LOCUS BG084096 668 bp mRNA linear EST 12-MAY-2010 DEFINITION H3096B04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3096B04 5', mRNA sequence. ACCESSION BG084096 VERSION BG084096.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 668) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG084096.1. Other_ESTs: H3096B04-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3096 row: B column: 04 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..668 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3096B04-5" /db_xref="taxon:10090" /clone="H3096B04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 180 a 160 c 154 g 174 t ORIGIN 1 gaactcaaac acattaggaa cctggaggag gagctgctgc agaggccatg gaagggtgct 61 gcttactggc ttgctcccca aggcttgttc agcctacttt cttatagaac ccaggaccac 121 cagcccagat acagcaccac ccaccatcac tgggccccac cagtcactga ttaaggaaag 181 gccttagagc cggatggatc ttatggaggc ttcttgtcaa ttgtggtttg ctcctctcag 241 atgactcgag cttgtgtcga ggtgacatga cagccaccac agccactgtt gttaggaaat 301 acttaggtgg agtcagactt cccattgtgt cttagttctg tgtatgcata gtgctcctac 361 acttaggatg agaatgatct tcttctgtaa gacagctaca tgtacttcat ttgcctgcat 421 gtctggtgct tgcagaagcc agaagacagc atgagattcc cccagaatga gttacagaca 481 gttaggagcc gccatgtagt gctggtactc aaactccgct ctctggaaga gcagcatgta 541 ctgttaactg ctgggccatc cttctagccc tgaaaataca atccaaaaaa aaaaaaggaa 601 aaccaacatt actttttaat tagttttcat agaaaggcat atagctggtt ggtacagtac 661 tttgtcta //