LOCUS BG083670 727 bp mRNA linear EST 26-JAN-2001 DEFINITION H3090G09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3090G09 5', mRNA sequence. ACCESSION BG083670 VERSION BG083670.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 727) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3090G09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3090 row: G column: 09 Seq primer: -21M13 Reverse POLYA=Yes. FEATURES Location/Qualifiers source 1..727 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3090G09-5" /db_xref="taxon:10090" /clone="H3090G09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 262 a 126 c 107 g 230 t ORIGIN 1 tttttttttt tttttttctt tctgccgtaa tctttcttta ggatcgctat tttattgttg 61 ccctttctgt tacacggatg tacacatcag atgttaaaag gtacaataca ttctacaact 121 gagcaccact ttctgtaact gaacaggcaa agaaattaca ctgaacatca gcatctggca 181 gtattttttg gggaaaaaaa agtgactaaa atgggtttaa attgattaac actattaaat 241 cacatctaat atttgattct acatgattca atacagctat acgatacaat tatacaaaat 301 gtgttaacat caaagaatac aaccaaaatt aagatagcaa acaaaaccta tataactttt 361 ttttgtacag gaaaaatact tttgaagtat gcatgtaact gcccattctt ttaaagaaaa 421 tctaccgcaa gcaaagttat caacctccag aaaatcacac agcattacta agcatatccc 481 caaaaagtgt acaatatgca cacttggaaa atacaaaatt aaaaaaattg taagcaacag 541 gtgagcttca tatttataag aatgtgaaaa gaagtcccat ttttagcact gttgtataaa 601 gaattgtctt ttgatgcgaa gttcatgaat tgtcctcctg ttgggaccac actttacaaa 661 aacaccttgt ttttgaaacg agattacang agcagatata gcgtcttagc aatgtcggat 721 agtcgan //