LOCUS BG083661 712 bp mRNA linear EST 26-JAN-2001 DEFINITION H3090F12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3090F12 5', mRNA sequence. ACCESSION BG083661 VERSION BG083661.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 712) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3090F12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3090 row: F column: 12 Seq primer: -21M13 Reverse POLYA=Yes. FEATURES Location/Qualifiers source 1..712 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3090F12-5" /db_xref="taxon:10090" /clone="H3090F12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 204 a 164 c 167 g 177 t ORIGIN 1 tttttttttt ttttggtttt tcaagacagg gtttctctgt gtagccctgg ctgtcctgga 61 actcactctg tagaccaggc tggcctcgaa ctcagaaatc cacctgcctc tgctgagatt 121 aaaggcatgc gccaccactc ccggaaaaaa aaaaaaagct ggccagtggt ggtaatgtct 181 ttcatcccag ccctcaggag gcagaggcag gccagacctc tgaattcaag ggctacagag 241 aaatcccgcc tcaaacaaaa caaacaaaca aacaaaaaac tcacaatgaa tgagtgaata 301 aagtaataaa ggctttgaat attttttttt aaagcaaagc aaaaactaaa agcacattcc 361 taacaacttc caggtgcaca gtcactgggg caggaaggaa ggaaggaagg acagcatcca 421 caaaccaggg cacacactcg tacctttctt ctggatcttc tttttcttct tgctgggaga 481 cttctcctcc ccatcctctt ccatagggcg tttcatgggt gtgatagcat aggtggtgct 541 gggaggaatt tgaactgaaa aggagaccaa gtgaaagcag ctgagacgtg caaacagcac 601 tctagagaga acctgtcatc aatgtctgtg tgtccttacc agtgtaggcc accgggttct 661 cgttctttgg tttcttgggc attttggaag gcacggggtg gatagtcgac aa //