LOCUS BG083615 812 bp mRNA linear EST 26-JAN-2001
DEFINITION H3090B06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3090B06 5', mRNA sequence.
ACCESSION BG083615
VERSION BG083615.1
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 812)
AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A.,
Tanaka,T.S., Carter,M.G. and Ko,M.S.H.
TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set
JOURNAL Unpublished
COMMENT Other_ESTs: H3090B06-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3090 row: B column: 06
Seq primer: -21M13 Reverse
POLYA=Yes.
FEATURES Location/Qualifiers
source 1..812
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3090B06-5"
/db_xref="taxon:10090"
/clone="H3090B06"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 201 a 193 c 196 g 220 t
ORIGIN
1 tttttttttt tttttttttt agtttaaata agatcattta tgagcttact aaatatcacg
61 attgatggat ccaaacaatt tatggactct taggttgcat gggactaagt gaacgacttc
121 agcatcagca gattaagaaa tcgctgaaat ccggagtttg agccccacct cagctcagct
181 tcctacagtc accttctcag aagacagtgt gtcccaccca gtgtctctag tctgtggatc
241 aaaccagtga cttatgtcct ggcctgcgac ctccaggatg ggtttcaaca gtaggtcccc
301 tttgaattcc tcgacaagcg gtgttagatt gtaaacaaat cccaggtaag acacccatag
361 gtcctcgagc tggttgtgtt ccgctacttc tgacggcgtg aaataccgac gttgaaaatt
421 atccaagtct ggcccggcta ctaggccccg gcgcggcatg gctcctggtc tacaagaggc
481 acaggctccc tcagctacct tctcgctcct ccgcaatctt aaaactacca ggtccaagaa
541 ctacctgaag tgcgtttgtc gctgacatgg aaaccattgt ccctttccgg ccaccggcca
601 cagtagttag ttatacgtaa gtagggcggn gtttgggctg cgcgtgtcca ccggaagcat
661 tccggattcc ggcttcgagc ctactgtggt tgaattcatt cttagaggaa atgaagacag
721 tccgtttcat aacggagtgt aggctagatg agttaggggt aacagaaagt atcgacgagg
781 agactagaat agagggtttg gatagtcgat gn
//