LOCUS BG083615 812 bp mRNA linear EST 26-JAN-2001 DEFINITION H3090B06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3090B06 5', mRNA sequence. ACCESSION BG083615 VERSION BG083615.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 812) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3090B06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3090 row: B column: 06 Seq primer: -21M13 Reverse POLYA=Yes. FEATURES Location/Qualifiers source 1..812 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3090B06-5" /db_xref="taxon:10090" /clone="H3090B06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 201 a 193 c 196 g 220 t ORIGIN 1 tttttttttt tttttttttt agtttaaata agatcattta tgagcttact aaatatcacg 61 attgatggat ccaaacaatt tatggactct taggttgcat gggactaagt gaacgacttc 121 agcatcagca gattaagaaa tcgctgaaat ccggagtttg agccccacct cagctcagct 181 tcctacagtc accttctcag aagacagtgt gtcccaccca gtgtctctag tctgtggatc 241 aaaccagtga cttatgtcct ggcctgcgac ctccaggatg ggtttcaaca gtaggtcccc 301 tttgaattcc tcgacaagcg gtgttagatt gtaaacaaat cccaggtaag acacccatag 361 gtcctcgagc tggttgtgtt ccgctacttc tgacggcgtg aaataccgac gttgaaaatt 421 atccaagtct ggcccggcta ctaggccccg gcgcggcatg gctcctggtc tacaagaggc 481 acaggctccc tcagctacct tctcgctcct ccgcaatctt aaaactacca ggtccaagaa 541 ctacctgaag tgcgtttgtc gctgacatgg aaaccattgt ccctttccgg ccaccggcca 601 cagtagttag ttatacgtaa gtagggcggn gtttgggctg cgcgtgtcca ccggaagcat 661 tccggattcc ggcttcgagc ctactgtggt tgaattcatt cttagaggaa atgaagacag 721 tccgtttcat aacggagtgt aggctagatg agttaggggt aacagaaagt atcgacgagg 781 agactagaat agagggtttg gatagtcgat gn //