LOCUS BG083518 589 bp mRNA linear EST 12-MAY-2010 DEFINITION H3088C06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3088C06 5', mRNA sequence. ACCESSION BG083518 VERSION BG083518.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 589) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083518.1. Other_ESTs: H3088C06-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3088 row: C column: 06 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..589 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3088C06-5" /db_xref="taxon:10090" /clone="H3088C06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 145 a 129 c 136 g 179 t ORIGIN 1 ggtatagcct gaagatttta aaaagaagac taaatgttgt gtagactttc tgtttctctt 61 cactttacca tattaggaaa aaaagatcta cctcatcatt tagagtaaca aagttgttag 121 tttatagatc cttatttcct tctggctaaa ttcagtaacc cacttgaaaa cctgggtgct 181 gaccaaaatg gcggtgtgct aggctccttc acacctgttt ggctaccagt agcaatcgtc 241 cgtaggagtt tacagtacca cacacaagaa tgtgctgtgc atcttgcttt gtttctttta 301 agtcacattg taaagtacta aggcatgttt cttgacttaa tttttgacat gtgagctgtt 361 ctgtgaagca tagagcatct cgcccattcc acagtttctc cctgctctcc tcaggagtta 421 gtggggttgg atttgtcaga ggtgatgagt taaagagtcc tttcacactt tccagatgtg 481 aaacacagga ctcctaggag cccgcgcagc ccgcagtggg gaggcatcct tgttgtattg 541 tgtggaggag cgctggcctc ccactgccag aaggctgggc gtgagcccc //