LOCUS BG083262 667 bp mRNA linear EST 12-MAY-2010 DEFINITION H3086C09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3086C09 5', mRNA sequence. ACCESSION BG083262 VERSION BG083262.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 667) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG083262.1. Other_ESTs: H3086C09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3086 row: C column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..667 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3086C09-5" /db_xref="taxon:10090" /clone="H3086C09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 192 a 127 c 136 g 212 t ORIGIN 1 attggccttg ttttccattt gaagttactt tggaatcctg taatttagtt gtaacataga 61 aaatgtgggg gggaaaggtt aaaaaaaaag tcaagtagtt gcaaagtgtt ttgcactgtt 121 gaactaagta attgtgtaaa tctgtgcaaa agtccgtatg gttatcttac tcttcctata 181 aggtacaata acatacactt tccgaactta gcatgggaca tagtgtttga agtgccaact 241 tcatcaagta atgcatgctt tattataaat acaaccctag ctttgaaaga tgttcttatg 301 ttttgaacag tctgcttcgg gggtaaattt aaaatagtct cttgaagccc cggtcatgga 361 agtaactttt ggtttaattg acattctctt attaaatgcc ctaccgtagt tcaaaggatt 421 actatcagtg tgcaaagcat ttaacagcag cagtctaagt gcagtcttgc tagctgtgct 481 gcctaacagt accatcttgg atccttcaga accaaagact tgcctgcagt gctgtcaccg 541 cctggctggt gacccttctg ctgtctgtag gaaaagcagc cctttatttt taacacaggc 601 tttaatgaac tacacctgtt aagttccaaa ggtcaaaatg gaggcacttg ctgtctaaga 661 gtccaac //