LOCUS BG081078 689 bp mRNA linear EST 12-MAY-2010 DEFINITION H3060H05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3060H05 5', mRNA sequence. ACCESSION BG081078 VERSION BG081078.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 689) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG081078.1. Other_ESTs: H3060H05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3060 row: H column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..689 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3060H05-5" /db_xref="taxon:10090" /clone="H3060H05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 244 a 129 c 162 g 154 t ORIGIN 1 cagctaggtg tagctattac ccctcatcag aagatgatat gaggagctgc tcttaaaaga 61 cccttgaaga tgaagctcag atcatcagga aatgaaaatc cgatatcttc ttatggcctc 121 caaagacacc aaatactcat ggactgcact gacaaacaat ggggacaaca cagttatctg 181 cataacattt ttaggattga agacagaatt actatgtaac ttgtctgtac cactttagag 241 gctaagctca aaagaatgga actcagctca attaaactcc acttctacgc tcacctgggc 301 actacccaca atacccaagt tagggaatgg gactgggtac ctaccagtgg ataataagta 361 aagactagat aaagcatgct ataatgatgc tggctttaga catgaagaac agaactgcca 421 ccgcagggaa atgggtggaa ctggaaatca ccatgtttat gaaaatagcc cagactgaaa 481 aaggccggtt ctcatatgtg ggatccaggc aggaggggac atgaaaagaa agagagagaa 541 ctattagaga tttggacaga gaaagggagg aagactatct gagtggataa tattgggaag 601 ggagaccttt aaaagacatt atacacattc acacaagtat tttagagaag aacgatcaag 661 gctgctggtg agaccatttg gtagaaggc //