LOCUS BG080790 597 bp mRNA linear EST 12-MAY-2010 DEFINITION H3057E09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3057E09 5', mRNA sequence. ACCESSION BG080790 VERSION BG080790.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 597) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080790.1. Other_ESTs: H3057E09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3057 row: E column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..597 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3057E09-5" /db_xref="taxon:10090" /clone="H3057E09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 136 a 127 c 164 g 170 t ORIGIN 1 gcatccccag tgcaggagga gaagagcatg tcttcttgac tgtaggatca aaggaggcca 61 ataatgggcc accatttaac ttccctggta attttggtgg gcccaatgcc tttgggccac 121 cactcccccc tccaggatta gggggtgcct ttggtgatgt taggcctgtt atgccttcgg 181 ttggaaatag tggtttgcct ggcctaggac tggaagttcc aggttttgga ggtgcaccaa 241 ataatataag tgggccatca ggatttgggg ggatccctca gaactttgga aatggcccag 301 gtagtttaaa tgctcctcct ggttttggaa gtggaccccc tggtcttgga agtgttcctg 361 ggcatttgag tgggcctcca gcctttgggc ctgggcctgg gcctggccca atccatattg 421 ggggtccccc tggctttgga gctagctctg gaaaaccagg acctacaata attaaggtgc 481 agaacatgcc ttttactgta tctattgatg aaattttaga tttcttttat ggttatcaag 541 taattccagg ttcagtatgt ttaaaataca atgaaaaagg tatgcctaca ggtgaag //