LOCUS BG080511 679 bp mRNA linear EST 26-JAN-2001
DEFINITION H3054E07-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone
H3054E07 5', mRNA sequence.
ACCESSION BG080511
VERSION BG080511.1
DBLINK BioSample: SAMN00163148
KEYWORDS EST.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 679)
AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A.,
Tanaka,T.S., Carter,M.G. and Ko,M.S.H.
TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set
JOURNAL Unpublished
COMMENT Other_ESTs: H3054E07-3
Contact: George J. Kargul
Laboratory of Genetics
National Institute on Aging/National Institutes of Health
333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA
Email: cdna@lgsun.grc.nia.nih.gov
This clone set has been freely distributed to the community. Please
visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details.
Plate: H3054 row: E column: 07
Seq primer: -21M13 Reverse
POLYA=No.
FEATURES Location/Qualifiers
source 1..679
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="niaEST:H3054E07-5"
/db_xref="taxon:10090"
/clone="H3054E07"
/sex="clones arrayed from a variety of cdna libraries"
/clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set"
/dev_stage="Clones arrayed from a variety of cDNA
libraries"
/lab_host="DH10B"
/note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This
clone is among a rearrayed set of 15,247 clones from 11
embryo cDNA libraries (including preimplantation stage
embryos from unfertilized egg to blastocyst, embryonic
part of E7.5 embryos, extraembryonic part of E7.5 embryos,
and E12.5 female mesonephros/gonad) and one newborn ovary
cDNA library. Average insert size 1.5 kb. All source
libraries are cloned unidirectionally with Oligo(dT)-Not
primers. References include: (1) Genome-wide expression
profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray, 2000, Proc.
Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale
cDNA analysis reveals phased gene expression patterns
during preimplantation mouse develolpment, 2000,
Development, 127: 1737-1749; (3) Genome-wide mapping of
unselected transcripts from extraembryonic tissue of
7.5-day mouse embryos reveals enrichment in the t-complex
and under-representation on the X chromosome, 1998, Hum
Mol Genet 7: 1967-1978."
BASE COUNT 193 a 125 c 131 g 230 t
ORIGIN
1 ggtgtacgta tatattttat ttagatttta ttcataaatt aagttgagag cgcttatttg
61 taaggtggct ctatttctct tgtcctttcg tactgggaga aatcgtaaat agatagaaac
121 cgacctggat tgctccggtc tgaactcaga tcacgtagga ctttaatcgt tgaacaaacg
181 aaccattaat agcttctaca ccattgggat gtcctgatcc aacatcgagg tcgtaaaccc
241 taattgtcga tatgaactct taaataggat tgcgctgtta tccctagggt aacttggtcc
301 gttgatcaaa atatatctgg gtcaataaga tatgttgatt ttactttgac ttgtaagtct
361 aggttataat cattcggagg attttttatt ctccgaggtc accccaaccg aaatttcaaa
421 cttatactat agtttttggg ccattaggtt taataaatta aatagataag ttatataatt
481 taagctccat agggtcttct cgtcttatta ttatatttca gcctcttcac tgaaaggtca
541 atttcactga ttaaagataa gagacagttg gaccctcgtt tagccgttca tgctagtccc
601 taattaagga acaagtgatt atgctacctt tgcacggtca ggataccgcg gccgttaaac
661 tttagtcact gggcaggca
//