LOCUS BG080370 633 bp mRNA linear EST 12-MAY-2010 DEFINITION H3052H01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3052H01 5', mRNA sequence. ACCESSION BG080370 VERSION BG080370.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 633) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080370.1. Other_ESTs: H3052H01-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3052 row: H column: 01 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..633 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3052H01-5" /db_xref="taxon:10090" /clone="H3052H01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 157 a 140 c 185 g 151 t ORIGIN 1 cttggtagca agatgtatcc tgttagcagc tggacacttg aacggcagtc agatggtccc 61 ccagaaagct aagtggtgac tctaagctaa ttgttgccct tcaagtgtga gtcaagggag 121 accaggattc tctctgggtg tagacttggg aagtcagccc caggttaggc tgcaaacaat 181 ctgtgaagtt tccaccccac accttgtgtc aagggaaaag atgccgttcc accatgtaac 241 cgctggcttg ttgtacaagg ggaattacct caaccgatct ctgtctgcag gcagtgacag 301 cgagcagttg gctaatatct ccgtggaaga actggatgaa atccgagaag ccttccgtgt 361 tctggacaga gatggcaacg gcttcatctc caagcaggag ctgggcatgg ccatgcgctc 421 cttggggtac atgccgagcg aagtggagct ggctatcatc atgcagcgtt tggacatgga 481 cggagatggg caggtagatt ttgatgaatt catgacgatt cttgggccca agctggtgtc 541 atcagaaggt cgggatggtt ttcttggaaa tacgatagac agtatcttct ggcagttcga 601 catgcagaga gtcacgctgg aagagctgaa gca //