LOCUS BG080028 613 bp mRNA linear EST 12-MAY-2010 DEFINITION H3048A05-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3048A05 5', mRNA sequence. ACCESSION BG080028 VERSION BG080028.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 613) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG080028.1. Other_ESTs: H3048A05-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3048 row: A column: 05 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..613 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3048A05-5" /db_xref="taxon:10090" /clone="H3048A05" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 140 a 145 c 182 g 146 t ORIGIN 1 tgaggaaagc tgccatgttt acggctggct ccaacttcaa ccatgtggtg cagagtgaaa 61 agtcagacac ccacactctg gtgacaagtg gggtgtatgc ttggtgccgg cacccctcct 121 atgtgggctg gttttactgg agtatcggaa cccaggtgat gctgtgtaat cccatctgtg 181 gcgtggtcta tgccctgacg gtgtggcgct tcttccgaga tcgcacagaa gaggaggaga 241 tctcactgat tcactttttt ggggaagagt acttggatta taaaaagagg gtgcccacag 301 gcctgccttt cataaagggg gtcaaggtgg agctatgacg gggtgaggcc ccgtgggacc 361 ggggaacctc tggccctgcg cagcctagga caaaactgtt tcaagttggg cactgcagag 421 tgagttttct taattgtttt atatgtaact aattactcct cagaacgtca cccaggacct 481 aatgttgaga agaccttggg tccaaaggag ccacggcagc cgtctcccgc actgaagtca 541 ggtggagtaa ggagtgtgtc aaggtggctc gtccacactc ttccactgtg gcagggtgat 601 gacccaagcc aca //