LOCUS BG079597 578 bp mRNA linear EST 12-MAY-2010 DEFINITION H3042D02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3042D02 5', mRNA sequence. ACCESSION BG079597 VERSION BG079597.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 578) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079597.1. Other_ESTs: H3042D02-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3042 row: D column: 02 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..578 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3042D02-5" /db_xref="taxon:10090" /clone="H3042D02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 143 a 126 c 155 g 154 t ORIGIN 1 gtgccgtggt agccgacaag gataagaaag gtcctgaaaa caaagatcca caaactgaaa 61 gccaacagct agaagccaaa gcagccacac ctccaaatcc cagcaaccca gcagactcag 121 ctggcaacct ggtggctccc tagtgtcccc tgggaccatg ctgtagagac ttttaagttg 181 catgcactgc gggacttgca gtcagctggc tgccattatt catagccgct tggtatgcag 241 taacttgggg tggaggtaaa acactaacaa agggggcttt tcttccatag tctattctgt 301 ataaataata agttgcctgt tccagaagtc taaccctaac ccctctggtt gtctgggacc 361 cctttctgtg catgggtgca atgatttagc catggctgtg ggctatctgg gtacaatgat 421 ttagccgtgg ctgtgggcta tctgggtgca atgatttagc cgtggctgtg ggctatcttc 481 ctgttagcct tggactgaag gggttttaag ttttgagggg taggaagaga gttacaggaa 541 tagagaacct gtttttgaga catgttgtca ttttgatg //