LOCUS BG079420 652 bp mRNA linear EST 12-MAY-2010 DEFINITION H3039E12-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3039E12 5', mRNA sequence. ACCESSION BG079420 VERSION BG079420.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 652) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079420.1. Other_ESTs: H3039E12-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3039 row: E column: 12 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..652 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3039E12-5" /db_xref="taxon:10090" /clone="H3039E12" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 236 a 87 c 117 g 212 t ORIGIN 1 gtcacaaaaa atagttttta aagggaaaag tacaatattt taataaactg gcttgcagtc 61 tggtaggtct acaaccccat agcacaacag gtttatagag atgtatatag aattatagtt 121 cttatttttt tcctttttgt gaagcctttt ataacagatt aacaatcaac tgcataaata 181 ttattaatat tttaaaaaga aagttaagtt gtattttggt aattcacaaa ctatcatgca 241 aagaaaaact cagaaagaca gaaaagaata aaatgatttg agataacatt atttacagtg 301 gatgtggttt taataaaatt actgccctat aatgtccctg acaatgtaca gaattgtata 361 tacttataat tgtaatgagt tagaaacaaa atcatggtgg cacttccatc cagttaaaac 421 tgcactgaat gaaaagttaa atctcacact aacttttcaa tttggtttgc aacaagaatg 481 gatggagatt tatattttct tctaattata gaattactag gctgttgagg aagtgttggt 541 ttgttctgcg ttttcatagt agatacataa agtaggaccc cgatagaggt gagagaggcc 601 actgagaagt gaagtgatag ctcagcattt acgcatgatt gcatattcag ag //