LOCUS BG079318 577 bp mRNA linear EST 26-JAN-2001 DEFINITION H3038D02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3038D02 5', mRNA sequence. ACCESSION BG079318 VERSION BG079318.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 577) AUTHORS Kargul,G.J., Dudekula,D.B., Qian,Y., Lim,M.K., Jaradat,S.A., Tanaka,T.S., Carter,M.G. and Ko,M.S.H. TITLE Verification and initial annotation of NIA mouse 15K cDNA clone set JOURNAL Unpublished COMMENT Other_ESTs: H3038D02-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3038 row: D column: 02 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..577 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3038D02-5" /db_xref="taxon:10090" /clone="H3038D02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 141 a 141 c 125 g 170 t ORIGIN 1 agaagaaaag aaattgaggc cagccttgcc agctctgaaa catcgtcttc cacctccact 61 gtcttcttca ttcaccctct atccttaaac catttctgtt tggctgcatc cttaactcct 121 tcatctaggt tcagcactga gagatcccct cataatttcc ccaaagcgta accatgtgtg 181 aataaatttt gagctagtag ggttgcagcc acgagtaagt cttcccttgt tattgtgtag 241 ccagaatgcc gcaaaacttc catgcctaag cgaactgttg agagtacgtt tcgatttctg 301 actgtgttag cctggaagtg cttgtcccaa ccttgtttct gagcatgaac gcccgcaagc 361 caacatgtta gttgaagcat cagggcgatt agcagcatga tatcaaaacg ctctgagctg 421 ctcgttcggc tatggcgtag gcctagtccg taggcaggac ttttcaagtc tcggaaggtt 481 tcttcaatct gcattcgctt cgaatagata ttaacaagtt gcttgggtgt tcgaatttca 541 acaggtaagt taggtgctag aacccatggc tcctttg //