LOCUS BG079152 623 bp mRNA linear EST 12-MAY-2010 DEFINITION H3036D09-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3036D09 5', mRNA sequence. ACCESSION BG079152 VERSION BG079152.2 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 623) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT On Jan 26, 2001 this sequence version replaced BG079152.1. Other_ESTs: H3036D09-3 Contact: George J. Kargul Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov This clone set has been freely distributed to the community. Please visit http://lgsun.grc.nia.nih.gov/cDNA/15k.html for details. Plate: H3036 row: D column: 09 Seq primer: -21M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..623 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3036D09-5" /db_xref="taxon:10090" /clone="H3036D09" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 142 a 199 c 161 g 121 t ORIGIN 1 ggcagatccc ggtggagagc gtccctggca ttcgagagac aggctggaag ccactgggaa 61 aggagaaggg caaggagctt aaggatcctg atcagctata tacgaccctc aaaaacctgc 121 tggctcagat caagtcacac cccagtgcct ggcccttcat ggaacctgtg aagaagtcag 181 aggctcctga ctactacgag gttatccgtt tccccattga cctgaagacc atgacagaac 241 ggttgcgcag tcgctactat gtgacccgga agctcttcgt agctgacctg cagcgggtca 301 tcgccaactg ccgggagtac aatcccccag acagcgaata ctgtcgctgc gccagtgccc 361 tggagaagtt cttctacttc aagctcaaag agggagggct catcgacaag tagcccccag 421 ctgggatccg caacatccac ctccatctcc tcagatccgt ttgggggctc ccggccccct 481 ctcccggact cagctggaga aactccagcc agggacccca gatcttacag actttctggc 541 cagcaggcac tcactcccaa gccagcagct ctctttccac cttccttgca tcccaccttg 601 gggagacgtc tggtctgggg cca //